Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g23151_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 3.0e-41 171.4 86 100.0
MBI02_g05670_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 2.2e-15 85.5 75 66.7
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 5.5e-11 70.9 75 57.3
TAR369G0698 Trochodendron aralioides HOM05D003531 ORTHO05D004354 9.5e-11 70.1 77 51.9
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 2.8e-10 68.6 75 52.0
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 4.7e-10 67.8 75 53.3
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 1.8e-09 65.9 75 52.0
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 2.3e-09 65.5 75 48.0
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 3.0e-09 65.1 75 49.3
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 4.0e-09 64.7 75 50.7
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 5.2e-09 64.3 75 52.0
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 5.2e-09 64.3 75 50.7
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 5.2e-09 64.3 75 45.3
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 5.2e-09 64.3 86 45.3
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 6.8e-09 63.9 75 50.7
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 6.8e-09 63.9 75 50.7
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 6.8e-09 63.9 75 50.7
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 6.8e-09 63.9 75 50.7
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 6.8e-09 63.9 75 50.7
RcHm_v2.0_Chr6g0268071 Rosa chinensis HOM05D003531 ORTHO05D004354 6.8e-09 63.9 75 50.7
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 6.8e-09 63.9 73 50.7
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 8.9e-09 63.5 75 50.7
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 1.2e-08 63.2 75 50.7
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.5e-08 62.8 75 50.7
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.5e-08 62.8 75 50.7
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 1.5e-08 62.8 74 52.7
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.5e-08 62.8 75 48.0
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.5e-08 62.8 75 48.0
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.5e-08 62.8 75 48.0
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 1.5e-08 62.8 74 51.4
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 2.0e-08 62.4 74 51.4
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 2.0e-08 62.4 79 46.8
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 2.0e-08 62.4 75 49.3
GSVIVG01032130001 Vitis vinifera HOM05D003531 ORTHO05D004354 2.0e-08 62.4 75 50.7
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 4.4e-08 61.2 74 48.6
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 5.7e-08 60.8 75 49.3
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 7.5e-08 60.5 73 49.3
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 7.5e-08 60.5 75 49.3
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 9.8e-08 60.1 74 47.3
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 9.8e-08 60.1 74 48.6
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 1.3e-07 59.7 75 49.3
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.3e-07 59.7 74 48.6
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.3e-07 59.7 74 48.6
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.3e-07 59.7 74 48.6
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 1.3e-07 59.7 75 45.3
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 1.3e-07 59.7 73 49.3
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 1.7e-07 59.3 74 47.3
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 1.7e-07 59.3 74 50.0
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 2.2e-07 58.9 74 45.9
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 2.2e-07 58.9 74 47.3
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 2.2e-07 58.9 74 47.3
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 2.2e-07 58.9 76 47.4
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 2.2e-07 58.9 74 48.6
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 2.2e-07 58.9 74 47.3
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 2.2e-07 58.9 75 42.7
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 2.8e-07 58.5 74 47.3
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.8e-07 58.5 74 47.3
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 2.8e-07 58.5 74 47.3
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 2.8e-07 58.5 75 48.0
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 2.8e-07 58.5 75 48.0
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 2.8e-07 58.5 76 46.1
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 2.8e-07 58.5 74 48.6
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 3.7e-07 58.2 74 47.3
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 3.7e-07 58.2 76 47.4
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 3.7e-07 58.2 74 48.6
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 3.7e-07 58.2 74 45.9
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 3.7e-07 58.2 74 47.3
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 3.7e-07 58.2 72 47.2
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 3.7e-07 58.2 75 49.3
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 6.3e-07 57.4 77 45.5
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 6.3e-07 57.4 75 50.7
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 8.3e-07 57.0 74 45.9
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 8.3e-07 57.0 75 48.0
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 8.3e-07 57.0 74 47.3
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 1.1e-06 56.6 72 47.2
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 1.4e-06 56.2 72 47.2
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.4e-06 56.2 77 44.2
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 1.4e-06 56.2 72 45.8
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 1.4e-06 56.2 75 48.0
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 1.4e-06 56.2 75 46.7
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 1.4e-06 56.2 75 48.0
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 1.4e-06 56.2 75 45.3
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 1.8e-06 55.8 72 45.8
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.8e-06 55.8 75 45.3
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 2.4e-06 55.5 72 45.8
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 2.4e-06 55.5 75 45.3
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 2.4e-06 55.5 72 45.8
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 3.1e-06 55.1 74 41.9
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 3.1e-06 55.1 77 44.2
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 4.1e-06 54.7 76 44.7
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 4.1e-06 54.7 76 44.7
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 4.1e-06 54.7 76 44.7
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 4.1e-06 54.7 76 44.7
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 4.1e-06 54.7 76 44.7
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 4.1e-06 54.7 76 44.7
CAN.G219.38 Capsicum annuum HOM05D003531 ORTHO05D004354 4.1e-06 54.7 71 46.5
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 4.1e-06 54.7 75 46.7
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 4.1e-06 54.7 72 45.8
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 5.4e-06 54.3 75 46.7
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 5.4e-06 54.3 75 46.7
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 5.4e-06 54.3 75 46.7
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 7.0e-06 53.9 78 43.6
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 7.0e-06 53.9 78 43.6
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 7.0e-06 53.9 78 43.6
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 7.0e-06 53.9 72 44.4
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 7.0e-06 53.9 72 44.4
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 7.0e-06 53.9 72 43.1
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 7.0e-06 53.9 72 44.4
Zm00001eb410840 Zea mays HOM05D003531 ORTHO05D004354 7.0e-06 53.9 72 45.8
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 9.2e-06 53.5 73 47.9
Zm00001eb137800 Zea mays HOM05D003531 ORTHO05D004354 9.2e-06 53.5 72 45.8


User provided reference genes

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