Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 8.8e-69 263.5 130 100.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.6e-46 189.5 97 97.9
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 5.8e-36 154.5 128 60.2
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.2e-30 136.7 136 50.0
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.6e-30 136.3 131 53.4
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.1e-30 136.0 137 50.4
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.8e-30 135.6 119 60.5
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 3.6e-30 135.2 133 53.4
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 4.7e-30 134.8 131 55.0
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.1e-29 133.7 110 60.0
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 4.0e-29 131.7 124 55.6
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.0e-29 131.7 128 55.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.8e-29 131.0 128 55.5
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.5e-28 129.8 115 54.8
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 4.4e-28 128.3 120 58.3
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 4.4e-28 128.3 133 48.9
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 4.4e-28 128.3 143 51.7
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 7.5e-28 127.5 120 57.5
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 7.5e-28 127.5 120 57.5
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 9.9e-28 127.1 119 54.6
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 9.9e-28 127.1 133 51.1
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.2e-27 125.9 115 51.3
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.2e-27 125.9 139 53.2
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 3.7e-27 125.2 136 47.8
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 3.7e-27 125.2 117 53.8
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 3.7e-27 125.2 117 53.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.9e-27 124.8 117 53.8
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 4.9e-27 124.8 109 56.9
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.4e-27 124.4 128 51.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 8.3e-27 124.0 120 58.3
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.1e-26 123.6 117 53.0
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.1e-26 123.6 127 53.5
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.1e-26 123.6 138 49.3
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.1e-26 123.6 142 53.5
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.4e-26 123.2 121 53.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.4e-26 123.2 119 53.8
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.9e-26 122.9 134 50.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.9e-26 122.9 130 50.8
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.4e-26 122.5 133 50.4
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.2e-26 122.1 140 50.7
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 4.1e-26 121.7 115 55.7
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.1e-26 121.7 140 50.7
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 5.4e-26 121.3 112 54.5
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 5.4e-26 121.3 142 50.7
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 7.1e-26 120.9 122 52.5
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 9.2e-26 120.6 134 50.7
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.2e-25 120.2 134 50.7
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.6e-25 119.8 132 50.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.6e-25 119.8 66 80.3
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.1e-25 119.4 128 49.2
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.1e-25 119.4 132 49.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.1e-25 119.4 132 49.2
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.1e-25 119.4 113 53.1
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.5e-25 118.6 133 54.1
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 4.6e-25 118.2 126 50.8
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 4.6e-25 118.2 123 52.0
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.6e-25 118.2 115 51.3
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 4.6e-25 118.2 115 51.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 4.6e-25 118.2 129 55.8
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 6.0e-25 117.9 114 52.6
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 6.0e-25 117.9 128 48.4
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 6.0e-25 117.9 130 47.7
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 7.8e-25 117.5 130 51.5
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.0e-24 117.1 116 54.3
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.3e-24 116.7 117 52.1
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.3e-24 116.7 123 48.0
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 2.3e-24 115.9 87 62.1
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.3e-24 115.9 134 48.5
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 2.3e-24 115.9 138 48.6
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.9e-24 115.2 113 53.1
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 5.1e-24 114.8 116 50.9
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 6.6e-24 114.4 124 49.2
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 6.6e-24 114.4 115 50.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 8.6e-24 114.0 129 48.1
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 8.6e-24 114.0 127 50.4
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.1e-23 113.6 113 53.1
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-23 113.6 117 52.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-23 113.6 130 49.2
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-23 113.6 119 51.3
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.3e-23 112.1 120 50.8
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 4.3e-23 111.7 112 53.6
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.3e-23 111.7 56 87.5
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 5.6e-23 111.3 127 48.0
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 5.6e-23 111.3 128 48.4
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 5.6e-23 111.3 115 50.4
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 5.6e-23 111.3 62 77.4
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.6e-22 109.8 117 49.6
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.6e-22 109.8 78 71.8
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.6e-22 109.8 58 79.3
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.6e-22 109.8 117 50.4
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.1e-22 109.4 75 66.7
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 2.1e-22 109.4 75 70.7
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 3.6e-22 108.6 75 65.3
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.6e-22 108.6 84 63.1
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 4.7e-22 108.2 112 51.8
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 6.2e-22 107.8 80 63.8
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 6.2e-22 107.8 61 78.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 8.1e-22 107.5 105 53.3
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 8.1e-22 107.5 105 53.3
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 8.1e-22 107.5 98 55.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.4e-21 106.7 66 71.2
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.4e-21 106.7 116 49.1
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.4e-21 106.7 116 49.1
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 2.4e-21 105.9 93 54.8
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.4e-21 105.9 111 48.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.0e-21 105.1 130 43.8
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 4.0e-21 105.1 56 78.6
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 5.2e-21 104.8 62 72.6
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 6.8e-21 104.4 64 70.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.0e-20 102.8 85 55.3
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.6e-20 102.4 84 56.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.8e-20 101.3 120 48.3
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 5.8e-20 101.3 59 69.5
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 9.9e-20 100.5 59 69.5
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.3e-19 100.1 64 73.4
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.9e-19 98.2 60 68.3
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 4.2e-18 95.1 56 69.6
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 5.4e-18 94.7 111 47.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.2e-17 93.6 172 34.9
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 2.1e-17 92.8 101 54.5
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.7e-17 92.4 118 47.5
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.0e-16 89.0 154 39.0
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-15 87.0 150 39.3
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.5e-15 86.7 107 46.7
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 5.6e-15 84.7 113 44.2
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 9.6e-15 84.0 51 66.7
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.3e-14 83.6 63 58.7
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.6e-14 83.2 51 64.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.6e-14 83.2 52 67.3
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.6e-14 83.2 81 55.6
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 4.8e-14 81.6 161 34.2
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 6.2e-14 81.3 101 51.5
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 8.1e-14 80.9 106 44.3
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 8.1e-14 80.9 106 44.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.1e-13 80.5 55 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 1.4e-13 80.1 59 62.7
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.5e-12 76.6 137 38.0
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.5e-12 76.6 90 48.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.5e-12 76.6 98 42.9
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 2.6e-12 75.9 49 65.3
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 9.9e-12 73.9 96 43.8
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 2.2e-11 72.8 52 71.2
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 8.7e-08 60.8 61 52.5
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 1.3e-06 57.0 110 37.3
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.6e-06 55.5 37 64.9


User provided reference genes

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