Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 1.3e-169 599.7 330 100.0
Nn4g24887 Nelumbo nucifera HOM05D027966 ORTHO05D025782 1.1e-27 128.3 266 38.0
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 9.8e-24 115.2 246 37.0
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.9e-14 84.3 96 46.9
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 9.2e-14 82.0 76 51.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.2e-13 81.6 195 32.8
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.6e-13 81.3 73 53.4
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.6e-13 81.3 111 40.5
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 4.6e-13 79.7 108 37.0
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.0e-13 79.3 119 34.5
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 7.8e-13 79.0 317 27.8
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.0e-12 78.6 106 38.7
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.7e-12 77.8 290 28.6
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 1.7e-12 77.8 72 52.8
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.3e-12 77.4 314 25.5
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.0e-12 77.0 117 35.0
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.9e-12 76.6 181 34.3
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 3.9e-12 76.6 105 39.0
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 5.1e-12 76.3 70 51.4
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.1e-12 76.3 183 33.3
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 5.1e-12 76.3 110 37.3
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 5.1e-12 76.3 71 52.1
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 8.6e-12 75.5 99 41.4
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.1e-11 75.1 109 41.3
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.9e-11 74.3 184 31.5
PSO170G0940 Papaver somniferum HOM05D027966 ORTHO05D025782 1.9e-11 74.3 261 32.6
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.9e-11 74.3 95 42.1
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.5e-11 73.9 318 26.4
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.5e-11 73.9 184 32.6
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 2.5e-11 73.9 117 35.0
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 2.5e-11 73.9 117 33.3
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 3.3e-11 73.6 183 32.8
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 3.3e-11 73.6 117 32.5
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.3e-11 73.2 186 31.2
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.3e-11 73.2 108 38.9
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 5.6e-11 72.8 103 38.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 5.6e-11 72.8 112 35.7
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 5.6e-11 72.8 115 36.5
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 5.6e-11 72.8 112 34.8
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 5.6e-11 72.8 107 36.4
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 5.6e-11 72.8 107 36.4
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 5.6e-11 72.8 73 45.2
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 7.3e-11 72.4 76 48.7
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 9.6e-11 72.0 171 31.0
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 9.6e-11 72.0 114 36.0
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.2e-10 71.6 103 38.8
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.6e-10 71.2 106 35.8
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.6e-10 71.2 124 37.1
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.6e-10 71.2 117 33.3
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.6e-10 71.2 191 30.9
PSO407G0040 Papaver somniferum HOM05D027966 ORTHO05D025782 2.1e-10 70.9 127 37.0
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.8e-10 70.5 77 42.9
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 3.6e-10 70.1 109 33.9
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 3.6e-10 70.1 197 28.9
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 3.6e-10 70.1 116 34.5
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 4.7e-10 69.7 121 34.7
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 4.7e-10 69.7 67 50.7
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 4.7e-10 69.7 67 50.7
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 6.2e-10 69.3 180 33.3
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 6.2e-10 69.3 165 31.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 8.1e-10 68.9 113 34.5
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 1.1e-09 68.6 116 33.6
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.1e-09 68.6 116 33.6
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.1e-09 68.6 119 33.6
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.4e-09 68.2 118 34.7
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.4e-09 68.2 103 36.9
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.4e-09 68.2 313 26.8
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.4e-09 68.2 73 43.8
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.8e-09 67.8 113 33.6
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.8e-09 67.8 68 48.5
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.4e-09 67.4 107 34.6
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.4e-09 67.4 193 29.5
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 3.1e-09 67.0 81 40.7
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.1e-09 67.0 56 60.7
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 3.1e-09 67.0 73 43.8
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 4.0e-09 66.6 135 33.3
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 4.0e-09 66.6 114 32.5
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 4.0e-09 66.6 75 45.3
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 5.2e-09 66.2 130 33.1
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 8.9e-09 65.5 173 32.4
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 8.9e-09 65.5 87 36.8
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.2e-08 65.1 103 36.9
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.2e-08 65.1 103 36.9
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.2e-08 65.1 296 24.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.2e-08 65.1 102 37.3
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.2e-08 65.1 68 45.6
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 1.5e-08 64.7 96 36.5
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 2.0e-08 64.3 103 36.9
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.0e-08 64.3 101 36.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.0e-08 64.3 62 50.0
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.0e-08 64.3 77 40.3
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.6e-08 63.9 114 32.5
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 2.6e-08 63.9 200 28.5
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.6e-08 63.9 64 48.4
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 3.4e-08 63.5 134 31.3
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 4.4e-08 63.2 81 39.5
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 4.4e-08 63.2 112 32.1
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 5.8e-08 62.8 78 39.7
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 7.6e-08 62.4 105 35.2
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.3e-07 61.6 297 27.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.3e-07 61.6 115 33.9
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 1.3e-07 61.6 280 25.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.7e-07 61.2 69 46.4
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.2e-07 60.8 134 29.9
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.2e-07 60.8 87 41.4
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 2.2e-07 60.8 134 29.1
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 2.2e-07 60.8 65 49.2
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 2.9e-07 60.5 285 25.3
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 2.9e-07 60.5 78 44.9
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.8e-07 60.1 56 50.0
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.8e-07 60.1 58 50.0
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 4.9e-07 59.7 66 50.0
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 6.4e-07 59.3 66 48.5
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 8.4e-07 58.9 112 30.4
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 1.1e-06 58.5 134 29.1
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 1.1e-06 58.5 78 43.6
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 1.1e-06 58.5 51 54.9
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.4e-06 58.2 64 46.9
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 1.4e-06 58.2 77 44.2
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 1.9e-06 57.8 152 31.6
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 1.9e-06 57.8 76 44.7
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.9e-06 57.8 61 44.3
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.4e-06 57.4 260 26.5
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.4e-06 57.4 75 45.3
Carub.0002s2739 Capsella rubella HOM05D001903 ORTHO05D001847 3.2e-06 57.0 71 43.7
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.2e-06 57.0 272 26.5
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 3.2e-06 57.0 77 44.2
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 3.2e-06 57.0 77 42.9
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 4.2e-06 56.6 72 45.8
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 4.2e-06 56.6 271 26.6
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 4.2e-06 56.6 67 43.3
arahy.Tifrunner.gnm1.ann1.6P54CG Arachis hypogaea HOM05D001903 ORTHO05D001847 5.4e-06 56.2 68 42.6
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 5.4e-06 56.2 70 42.9
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 5.4e-06 56.2 74 40.5
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 5.4e-06 56.2 37 67.6
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 7.1e-06 55.8 284 27.1
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 7.1e-06 55.8 286 26.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 7.1e-06 55.8 77 44.2
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 9.3e-06 55.5 284 24.3
Sc08g0006520 Simmondsia chinensis HOM05D001903 ORTHO05D001847 9.3e-06 55.5 56 51.8


User provided reference genes

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