Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 3.2e-187 658.3 340 100.0
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 5.3e-105 385.2 311 66.6
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.3e-102 374.4 345 63.5
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.6e-101 373.6 302 69.5
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.4e-97 359.8 333 62.2
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.2e-96 357.5 245 78.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 2.6e-96 356.3 280 70.7
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 4.5e-96 355.5 221 84.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.6e-96 354.8 278 70.5
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 4.9e-95 352.1 242 76.9
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 8.4e-95 351.3 235 77.9
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.1e-94 350.9 232 77.6
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.4e-94 349.7 239 77.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.2e-94 349.4 302 65.9
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 3.2e-94 349.4 316 64.2
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 5.4e-94 348.6 219 82.6
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 7.1e-94 348.2 283 66.8
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-93 347.4 230 78.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 2.1e-93 346.7 230 79.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 3.5e-93 345.9 274 69.7
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.5e-93 345.9 231 78.8
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.6e-93 345.5 220 81.4
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.3e-92 344.0 212 84.9
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.3e-92 344.0 223 80.3
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.8e-92 343.6 246 73.2
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.9e-92 342.4 239 75.7
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 5.1e-92 342.0 265 69.1
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 6.7e-92 341.7 242 75.2
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 6.7e-92 341.7 232 77.6
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.1e-91 340.9 322 61.2
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.5e-91 340.5 219 78.5
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.5e-91 340.5 226 79.2
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.5e-91 339.7 242 73.6
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.3e-91 339.3 217 77.4
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 3.3e-91 339.3 224 79.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 4.3e-91 339.0 247 72.9
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.6e-91 338.6 224 79.0
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 5.6e-91 338.6 225 76.9
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 7.4e-91 338.2 248 72.6
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.4e-91 338.2 292 63.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.4e-91 338.2 220 80.5
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.6e-91 337.8 223 78.5
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.6e-91 337.8 223 78.5
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-90 337.4 220 80.0
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-90 337.4 220 80.0
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.6e-90 337.0 231 75.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.8e-90 336.3 221 78.7
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.8e-90 336.3 224 78.6
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 3.7e-90 335.9 222 79.3
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 3.7e-90 335.9 246 72.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 4.8e-90 335.5 248 72.6
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 8.1e-90 334.7 219 77.6
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.1e-90 334.7 231 74.5
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 8.1e-90 334.7 221 77.8
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.1e-89 334.3 224 78.1
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.1e-89 334.3 219 78.5
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.1e-89 334.3 232 74.6
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.4e-89 334.0 218 77.5
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.8e-89 333.6 222 78.8
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.8e-89 333.6 232 75.9
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.1e-89 332.8 220 78.6
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 4.0e-89 332.4 232 75.9
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.0e-89 332.4 231 74.9
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 5.3e-89 332.0 231 73.6
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 6.9e-89 331.6 239 74.1
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 6.9e-89 331.6 245 72.7
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 6.9e-89 331.6 245 72.7
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 9.0e-89 331.3 280 65.7
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.0e-89 331.3 220 78.2
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.5e-88 330.5 232 73.7
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-88 330.5 220 77.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.0e-88 330.1 239 73.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.0e-88 330.1 218 78.0
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 2.6e-88 329.7 221 76.0
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.6e-88 329.7 246 72.4
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 4.5e-88 328.9 222 77.5
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 5.8e-88 328.6 235 74.9
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 7.6e-88 328.2 272 65.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 7.6e-88 328.2 222 76.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.0e-87 327.8 233 75.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.0e-87 327.8 232 73.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.0e-87 327.8 218 77.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.3e-87 327.4 233 72.5
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.7e-87 327.0 239 72.4
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.7e-87 327.0 239 72.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 2.2e-87 326.6 232 74.1
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 2.9e-87 326.2 233 75.1
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 3.8e-87 325.9 232 74.1
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 6.5e-87 325.1 232 73.3
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 8.4e-87 324.7 246 67.5
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.1e-86 324.3 301 61.8
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-86 323.6 223 77.1
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.5e-86 323.2 225 76.0
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.2e-86 322.8 221 76.0
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.2e-86 322.4 221 75.6
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 9.3e-86 321.2 221 77.8
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 9.3e-86 321.2 225 75.1
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.1e-85 320.1 220 75.5
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 4.6e-85 318.9 212 78.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.6e-85 318.9 220 75.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 7.9e-85 318.2 244 69.7
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 7.9e-85 318.2 217 74.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.0e-84 317.8 225 74.7
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.0e-84 317.8 219 74.4
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.8e-84 317.0 220 75.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.3e-84 316.6 220 75.0
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.3e-84 316.6 220 75.0
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.3e-84 316.6 220 75.5
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 8.7e-84 314.7 218 73.9
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.5e-83 313.9 232 71.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.9e-83 313.5 266 65.4
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 9.6e-83 311.2 222 72.1
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.6e-82 310.5 232 70.7
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 2.1e-82 310.1 222 71.6
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.7e-82 309.3 222 71.6
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 8.2e-82 308.1 224 70.5
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.1e-81 307.8 305 59.7
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.2e-80 304.3 229 69.0
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.0e-80 303.5 220 71.8
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.9e-79 299.7 231 70.1
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 5.0e-79 298.9 222 71.2
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 5.5e-78 295.4 239 66.9
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.5e-75 287.3 177 81.9
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.7e-74 282.7 177 82.5
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.4e-70 270.8 229 63.8
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.3e-68 263.5 169 79.3
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.7e-68 261.9 190 73.7
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.3e-67 259.6 246 61.4
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.0e-64 250.4 276 54.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.4e-64 249.6 166 77.1
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.5e-63 245.4 246 55.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 7.2e-62 241.9 200 69.0
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.2e-61 241.1 313 48.2
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.7e-61 239.2 204 65.7
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.3e-60 236.9 190 69.5
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.0e-60 236.5 227 58.1
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.0e-60 236.5 227 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.5e-59 234.2 215 58.6
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.4e-59 231.9 173 71.7
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.7e-56 221.9 156 76.3
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.1e-54 218.0 158 73.4
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 3.6e-53 213.0 179 61.5
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 7.5e-51 205.3 184 57.1
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 4.8e-50 202.6 160 68.8
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 9.1e-49 198.4 185 56.2
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.8e-47 193.0 252 48.8
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 8.5e-47 191.8 164 61.6
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.1e-30 138.3 274 36.1
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.7e-29 132.9 241 36.1
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.2e-24 118.2 68 79.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.0e-20 105.1 209 35.9
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.0e-19 100.9 203 35.0
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.0e-16 90.9 234 28.2
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.7e-13 79.7 262 29.8
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 8.9e-12 75.5 42 81.0
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.3e-10 68.9 41 75.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-09 68.6 46 73.9
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.4e-09 68.2 69 53.6
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 4.1e-09 66.6 177 31.1
SalBow8G0833 Salvia bowleyana HOM05D004347 ORTHO05D005270 1.3e-07 61.6 120 34.2
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 6.6e-07 59.3 57 56.1
Cc01_g07560 Coffea canephora HOM05D004347 ORTHO05D005270 8.6e-07 58.9 120 33.3
Migut.M00916 Erythranthe guttata HOM05D004347 ORTHO05D005270 8.6e-07 58.9 120 33.3
Haze_22527 Corylus avellana HOM05D004347 ORTHO05D005270 3.3e-06 57.0 113 32.7
Eucgr.F01880 Eucalyptus grandis HOM05D004347 ORTHO05D005270 3.3e-06 57.0 113 32.7
Aqoxy5G01587 Aquilegia oxysepala HOM05D004347 ORTHO05D005270 4.3e-06 56.6 113 31.9
CAN.G1226.45 Capsicum annuum HOM05D004347 ORTHO05D005270 4.3e-06 56.6 120 33.3
Cfa013854 Carpinus fangiana HOM05D004347 ORTHO05D005270 4.3e-06 56.6 113 32.7
Dinv39440 Davidia involucrata HOM05D004347 ORTHO05D005270 4.3e-06 56.6 113 32.7
Oeu030920.1 Olea europaea HOM05D004347 ORTHO05D005270 4.3e-06 56.6 110 33.6
Cpa.g.sc1000.1 Carica papaya HOM05D000705 ORTHO05D001273 7.3e-06 55.8 105 34.3
FAN20G0532 Fragaria x ananassa HOM05D004347 ORTHO05D005270 7.3e-06 55.8 113 31.9
PSO302G0103 Papaver somniferum HOM05D004347 ORTHO05D005270 7.3e-06 55.8 114 31.6
QL02p009188 Quercus lobata HOM05D004347 ORTHO05D005270 7.3e-06 55.8 113 31.9
GSVIVG01009739001 Vitis vinifera HOM05D004347 ORTHO05D005270 7.3e-06 55.8 113 32.7
MSTRG.7482 Avicennia marina HOM05D004347 ORTHO05D005270 9.5e-06 55.5 120 32.5
COL.COLO4_26277 Corchorus olitorius HOM05D004347 ORTHO05D005270 9.5e-06 55.5 113 31.9
Lj2A1048T54 Lonicera japonica HOM05D004347 ORTHO05D005270 9.5e-06 55.5 113 32.7


User provided reference genes

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