Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.0e-88 330.1 172 100.0
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 6.7e-32 141.4 161 54.7
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 5.3e-21 105.1 168 42.3
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.9e-19 99.4 169 40.8
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 8.5e-19 97.8 196 37.8
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.9e-18 96.7 167 40.7
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.5e-18 96.3 170 41.8
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.2e-18 94.7 182 42.9
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 7.9e-17 91.3 193 35.8
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.0e-16 89.4 193 35.8
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.0e-16 89.4 193 35.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.9e-16 89.0 179 41.3
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.1e-16 88.6 198 35.9
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 6.7e-16 88.2 182 39.0
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.0e-15 86.7 194 35.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 2.0e-15 86.7 189 36.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.6e-15 86.3 176 38.1
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.7e-15 85.1 188 36.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 5.7e-15 85.1 180 38.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 9.7e-15 84.3 183 35.5
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.3e-14 84.0 192 35.4
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.7e-14 83.6 175 36.6
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.7e-14 83.6 180 36.1
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.2e-14 83.2 190 35.8
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 3.7e-14 82.4 189 34.4
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.3e-14 81.6 182 37.9
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 6.3e-14 81.6 204 33.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 6.3e-14 81.6 165 40.0
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 8.2e-14 81.3 162 40.1
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 8.2e-14 81.3 154 40.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.1e-13 80.9 182 37.9
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.4e-13 80.5 193 34.7
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 1.8e-13 80.1 202 33.2
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 2.4e-13 79.7 156 41.0
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 2.4e-13 79.7 195 32.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.1e-13 79.3 167 37.7
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.1e-13 79.3 182 37.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 5.3e-13 78.6 170 39.4
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 9.1e-13 77.8 167 39.5
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.5e-12 77.0 177 36.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.5e-12 77.0 182 35.7
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.0e-12 76.6 168 39.3
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.0e-12 76.6 166 36.7
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 2.6e-12 76.3 170 38.8
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.6e-12 76.3 167 37.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.6e-12 76.3 161 40.4
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.4e-12 75.9 193 35.2
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 4.5e-12 75.5 191 34.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.9e-12 75.1 179 35.8
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.9e-12 75.1 182 36.8
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.9e-12 75.1 182 36.8
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.9e-12 75.1 162 36.4
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 7.7e-12 74.7 206 32.0
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 7.7e-12 74.7 170 37.1
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.0e-11 74.3 186 35.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.7e-11 73.6 177 35.0
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.7e-11 73.6 184 34.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.2e-11 73.2 184 32.1
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.2e-11 73.2 194 33.0
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.9e-11 72.8 177 32.8
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 3.8e-11 72.4 132 39.4
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 3.8e-11 72.4 194 34.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 5.0e-11 72.0 166 33.1
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 6.5e-11 71.6 158 36.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 8.5e-11 71.2 165 36.4
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 8.5e-11 71.2 181 33.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.1e-10 70.9 186 33.9
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-10 70.5 186 33.3
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.9e-10 70.1 193 34.7
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.9e-10 70.1 190 33.7
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.9e-10 70.1 168 33.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.5e-10 69.7 161 35.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.5e-10 69.7 164 35.4
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-10 69.7 168 35.1
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.5e-10 69.7 181 36.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.2e-10 69.3 163 36.8
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 3.2e-10 69.3 139 43.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.2e-10 69.3 173 34.1
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 3.2e-10 69.3 186 35.5
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.2e-10 69.3 205 32.2
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 4.2e-10 68.9 168 37.5
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 4.2e-10 68.9 168 37.5
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.2e-10 68.9 201 34.3
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 4.2e-10 68.9 166 35.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 4.2e-10 68.9 169 37.9
PSO063G2919 Papaver somniferum HOM05D009517 ORTHO05D011612 4.2e-10 68.9 134 38.1
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 4.2e-10 68.9 184 30.4
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.5e-10 68.6 187 32.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.2e-09 67.4 180 32.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.2e-09 67.4 176 34.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.6e-09 67.0 187 32.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.6e-09 67.0 166 36.1
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.7e-09 66.2 196 30.6
PSO782G3294 Papaver somniferum HOM05D009517 ORTHO05D011612 2.7e-09 66.2 132 37.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.6e-09 65.9 195 32.8
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.6e-09 65.9 168 33.9
Os04g0672300 Oryza sativa ssp. japonica HOM05D009517 ORTHO05D011612 3.6e-09 65.9 144 38.2
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 3.6e-09 65.9 205 31.2
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 4.7e-09 65.5 197 34.0
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.7e-09 65.5 134 41.0
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.7e-09 65.5 181 29.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.0e-08 64.3 188 35.1
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.0e-08 64.3 168 33.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.0e-08 64.3 181 31.5
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.0e-08 64.3 132 35.6
HPP92_008578 Vanilla planifolia HOM05D009517 ORTHO05D011612 1.0e-08 64.3 137 38.7
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.4e-08 63.9 154 34.4
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.8e-08 63.5 153 37.9
MD13G1009000 Malus domestica HOM05D009517 ORTHO05D011612 1.8e-08 63.5 133 39.8
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.3e-08 63.2 169 33.1
Prupe.1G343700 Prunus persica HOM05D009517 ORTHO05D011612 2.3e-08 63.2 143 39.2
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 3.0e-08 62.8 168 33.3
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.0e-08 62.8 178 35.4
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.9e-08 62.4 160 34.4
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 3.9e-08 62.4 166 33.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 5.2e-08 62.0 151 37.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 6.7e-08 61.6 172 34.3
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 6.7e-08 61.6 172 35.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 6.7e-08 61.6 172 34.3
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.7e-08 61.6 170 34.7
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 8.8e-08 61.2 57 59.6
Zm00001eb066620 Zea mays HOM05D009517 ORTHO05D011612 8.8e-08 61.2 141 38.3
FAN07G2507 Fragaria x ananassa HOM05D009517 ORTHO05D011612 1.1e-07 60.8 140 39.3
MBI06_g19436_MAGBIO Magnolia biondii HOM05D009517 ORTHO05D011612 1.1e-07 60.8 140 37.9
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.1e-07 60.8 173 35.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-07 60.8 206 34.0
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.1e-07 60.8 191 32.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.1e-07 60.8 196 34.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-07 60.5 172 33.1
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-07 60.5 169 34.9
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.5e-07 60.5 141 36.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.0e-07 60.1 159 34.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-07 59.7 173 31.8
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.3e-07 59.3 189 31.2
CDE05G1588 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 3.3e-07 59.3 137 37.2
FvH4_4g36470 Fragaria vesca HOM05D009517 ORTHO05D011612 3.3e-07 59.3 140 38.6
FAN12G1831 Fragaria x ananassa HOM05D009517 ORTHO05D011612 3.3e-07 59.3 140 38.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 3.3e-07 59.3 160 36.9
RcHm_v2.0_Chr4g0446231 Rosa chinensis HOM05D009517 ORTHO05D011612 5.7e-07 58.5 140 38.6
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 7.4e-07 58.2 178 32.0
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.4e-07 58.2 163 36.8
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 9.7e-07 57.8 159 33.3
Potri.008G145000 Populus trichocarpa HOM05D009517 ORTHO05D011612 9.7e-07 57.8 145 35.2
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 9.7e-07 57.8 58 50.0
Zm00001eb369720 Zea mays HOM05D033938 ORTHO05D004706 9.7e-07 57.8 43 62.8
MD16G1007000 Malus domestica HOM05D009517 ORTHO05D011612 1.3e-06 57.4 166 31.9
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.3e-06 57.4 170 34.1
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 1.7e-06 57.0 61 49.2
Zm00001eb433470 Zea mays HOM05D009517 ORTHO05D011612 1.7e-06 57.0 138 42.0
FAN17G1386 Fragaria x ananassa HOM05D009517 ORTHO05D011612 2.8e-06 56.2 140 37.9
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 3.7e-06 55.8 175 33.1
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 3.7e-06 55.8 206 29.1
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 4.8e-06 55.5 161 34.2
Sabra10G0069600 Salix brachista HOM05D009517 ORTHO05D011612 4.8e-06 55.5 134 37.3
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 8.2e-06 54.7 118 43.2
QL03p042931 Quercus lobata HOM05D009517 ORTHO05D011612 8.2e-06 54.7 131 38.9


User provided reference genes

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