Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.9e-131 471.5 240 100.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.6e-119 433.0 285 81.4
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 8.3e-105 384.0 215 88.4
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.1e-104 383.6 228 84.2
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-104 383.6 228 86.0
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 3.1e-104 382.1 228 84.2
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 4.1e-104 381.7 215 88.8
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 9.1e-104 380.6 215 88.4
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.1e-104 380.6 228 82.9
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.2e-103 380.2 228 82.9
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.0e-103 379.4 215 87.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.5e-103 378.6 231 82.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 4.5e-103 378.3 215 87.9
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.7e-103 377.5 228 84.2
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 7.7e-103 377.5 227 82.8
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.8e-102 375.2 226 83.2
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 3.8e-102 375.2 226 82.7
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.8e-102 375.2 228 84.2
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.0e-102 374.8 232 82.3
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 6.5e-102 374.4 228 82.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 8.5e-102 374.0 226 83.2
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.1e-101 373.6 215 85.6
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.1e-101 373.6 215 84.7
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.1e-101 373.6 229 84.3
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.5e-101 373.2 222 84.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.9e-101 372.9 228 82.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.9e-101 372.9 214 85.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.5e-101 372.5 215 84.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 4.2e-101 371.7 215 85.1
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 5.5e-101 371.3 228 82.5
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 7.2e-101 370.9 226 82.3
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 7.2e-101 370.9 215 85.6
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 9.5e-101 370.5 222 84.2
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.2e-100 370.2 215 84.7
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.1e-100 369.4 228 81.1
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.6e-100 368.6 228 81.1
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 3.6e-100 368.6 245 75.5
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 4.7e-100 368.2 215 84.7
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 4.7e-100 368.2 222 82.9
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 6.1e-100 367.9 222 83.8
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.4e-99 366.7 231 80.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-99 366.7 237 80.6
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.8e-99 366.3 214 86.0
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 2.3e-99 365.9 215 83.7
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.3e-99 365.9 231 79.7
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.3e-99 365.9 228 81.1
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 3.0e-99 365.5 215 83.3
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.0e-99 365.5 222 82.9
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.0e-99 365.5 215 84.7
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.0e-99 365.5 229 82.5
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 4.0e-99 365.2 228 81.1
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 4.0e-99 365.2 228 81.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 6.8e-99 364.4 238 77.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 8.8e-99 364.0 215 83.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 8.8e-99 364.0 215 83.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.2e-98 363.6 215 84.2
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.5e-98 363.2 215 83.7
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.5e-98 363.2 215 83.7
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.0e-98 362.8 229 82.1
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.0e-98 362.8 222 80.6
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.6e-98 362.5 229 82.1
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.4e-98 361.7 226 82.3
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.4e-98 361.7 224 79.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.7e-98 361.3 215 83.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 7.5e-98 360.9 228 80.3
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 7.5e-98 360.9 207 86.5
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 7.5e-98 360.9 228 78.9
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 9.8e-98 360.5 228 78.9
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 1.3e-97 360.1 228 78.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.3e-97 360.1 228 80.7
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.7e-97 359.8 216 84.3
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.7e-97 359.8 228 80.7
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.2e-97 359.4 228 80.3
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.8e-97 359.0 228 81.1
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.7e-97 358.6 228 80.3
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.7e-97 358.6 224 79.5
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 3.7e-97 358.6 217 84.8
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 4.9e-97 358.2 228 78.1
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 8.3e-97 357.5 212 84.0
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 8.3e-97 357.5 215 81.9
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.1e-96 357.1 228 78.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.8e-96 356.3 230 79.6
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.8e-96 356.3 224 79.5
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.4e-96 355.9 224 79.0
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 3.1e-96 355.5 228 78.5
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 5.4e-96 354.8 217 83.4
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 9.2e-96 354.0 228 78.1
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 9.2e-96 354.0 215 81.4
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.6e-95 353.2 212 83.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-95 352.4 206 85.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.7e-95 352.4 228 78.1
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.7e-95 352.4 215 82.3
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.7e-95 352.4 228 76.8
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 3.5e-95 352.1 228 78.5
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.3e-94 349.4 234 78.6
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.9e-94 349.0 218 78.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 3.8e-94 348.6 206 82.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.9e-93 346.3 215 79.5
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 5.6e-93 344.7 218 79.4
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.6e-92 343.2 224 78.6
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.6e-92 343.2 215 81.4
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 4.7e-92 341.7 227 77.1
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.0e-91 340.5 201 83.6
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.8e-91 339.7 215 80.0
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.0e-91 339.0 211 79.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.0e-90 336.3 210 79.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 5.7e-90 334.7 222 77.9
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.7e-89 333.2 262 67.2
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.9e-89 332.4 228 73.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 4.9e-89 331.6 228 75.0
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.1e-88 330.5 225 75.1
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.4e-88 330.1 215 75.3
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 5.4e-88 328.2 202 82.2
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-86 323.2 226 71.7
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.6e-84 316.6 191 82.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 5.2e-83 311.6 183 83.1
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 4.1e-80 302.0 215 74.4
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.5e-79 298.9 179 82.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.0e-78 295.8 199 74.9
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 2.5e-77 292.7 181 81.8
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 7.3e-77 291.2 214 68.7
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.2e-74 283.9 214 67.3
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 4.9e-73 278.5 164 84.1
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.7e-71 272.7 193 72.5
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 6.0e-71 271.6 214 65.0
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.3e-70 269.6 164 82.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.3e-69 265.4 230 66.1
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.7e-68 261.9 215 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.8e-67 260.0 209 62.2
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.0e-66 256.5 160 79.4
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 7.6e-66 254.6 197 70.1
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.9e-65 252.7 150 80.7
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 5.2e-59 231.9 154 74.7
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.2e-58 230.7 152 76.3
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 5.8e-58 228.4 237 50.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.7e-54 216.9 218 51.8
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 3.6e-52 209.1 131 77.1
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.3e-49 200.7 198 57.6
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 6.4e-41 171.8 100 81.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.7e-38 161.4 115 69.6
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 6.9e-35 151.8 96 79.2
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.9e-32 143.7 92 75.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.5e-31 139.4 109 67.9
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.6e-26 123.2 85 71.8
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 3.4e-26 122.9 134 53.7
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.2e-24 115.2 114 59.6
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 4.5e-18 95.9 63 66.7
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.7e-18 95.1 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.4e-16 88.2 97 49.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.6e-13 80.1 71 64.8
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.2e-12 77.0 208 29.3
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 9.1e-11 71.6 68 52.9
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.2e-10 71.2 114 39.5
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 9.4e-08 61.6 63 55.6


User provided reference genes

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