Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.6e-33 145.6 76 100.0
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.9e-23 112.1 77 81.8
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.4e-21 105.9 75 70.7
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.5e-17 91.3 73 60.3
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 7.8e-17 90.1 77 62.3
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.3e-16 89.4 76 61.8
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 8.1e-14 80.1 61 63.9
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.4e-13 78.6 61 62.3
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 8.9e-13 76.6 83 49.4
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 1.2e-12 76.3 66 60.6
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 1.5e-12 75.9 84 51.2
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.0e-12 75.5 66 60.6
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.6e-12 75.1 66 56.1
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.4e-12 74.7 75 57.3
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 3.4e-12 74.7 87 49.4
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 4.4e-12 74.3 63 57.1
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 5.8e-12 73.9 66 54.5
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.6e-12 73.6 89 47.2
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 7.6e-12 73.6 65 58.5
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 9.9e-12 73.2 84 47.6
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.3e-11 72.8 65 55.4
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.7e-11 72.4 75 50.7
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.2e-11 72.0 78 55.1
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.2e-11 72.0 74 55.4
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 2.9e-11 71.6 59 61.0
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 2.9e-11 71.6 74 50.0
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 2.9e-11 71.6 63 60.3
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 2.9e-11 71.6 60 60.0
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 2.9e-11 71.6 60 60.0
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 4.9e-11 70.9 75 46.7
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 6.4e-11 70.5 64 56.2
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 6.4e-11 70.5 72 56.9
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 8.4e-11 70.1 85 45.9
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 8.4e-11 70.1 73 53.4
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 1.1e-10 69.7 83 47.0
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.4e-10 69.3 82 47.6
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.4e-10 69.3 69 53.6
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 1.4e-10 69.3 60 60.0
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.9e-10 68.9 75 52.0
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.9e-10 68.9 75 52.0
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 1.9e-10 68.9 80 46.2
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.9e-10 68.9 80 53.8
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 1.9e-10 68.9 63 57.1
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 2.4e-10 68.6 75 44.0
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 2.4e-10 68.6 65 58.5
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 2.4e-10 68.6 66 56.1
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 3.2e-10 68.2 64 59.4
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.1e-10 67.8 71 49.3
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 4.1e-10 67.8 63 55.6
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 4.1e-10 67.8 79 49.4
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 5.4e-10 67.4 56 60.7
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.4e-10 67.4 67 50.7
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 5.4e-10 67.4 76 46.1
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 5.4e-10 67.4 74 51.4
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 7.1e-10 67.0 73 47.9
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.1e-10 67.0 87 47.1
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.1e-10 67.0 87 47.1
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 7.1e-10 67.0 70 48.6
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.1e-10 67.0 78 50.0
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.1e-10 67.0 58 58.6
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 9.2e-10 66.6 88 44.3
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 9.2e-10 66.6 64 54.7
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 9.2e-10 66.6 61 54.1
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 9.2e-10 66.6 59 57.6
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.2e-09 66.2 76 48.7
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 1.2e-09 66.2 55 56.4
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 1.2e-09 66.2 60 55.0
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 1.2e-09 66.2 83 49.4
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.6e-09 65.9 73 41.1
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 1.6e-09 65.9 65 49.2
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 1.6e-09 65.9 82 46.3
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 2.1e-09 65.5 66 54.5
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.1e-09 65.5 73 41.1
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 2.1e-09 65.5 73 47.9
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 2.1e-09 65.5 83 43.4
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.7e-09 65.1 72 47.2
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.7e-09 65.1 58 53.4
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 2.7e-09 65.1 56 53.6
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.7e-09 65.1 87 46.0
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.7e-09 65.1 55 56.4
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.7e-09 65.1 55 56.4
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 2.7e-09 65.1 66 53.0
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.5e-09 64.7 73 47.9
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 3.5e-09 64.7 64 54.7
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 4.6e-09 64.3 78 48.7
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 4.6e-09 64.3 61 55.7
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 4.6e-09 64.3 60 51.7
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 4.6e-09 64.3 55 58.2
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 4.6e-09 64.3 74 50.0
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 6.0e-09 63.9 66 56.1
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 6.0e-09 63.9 77 46.8
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 7.8e-09 63.5 76 47.4
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 7.8e-09 63.5 66 56.1
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 7.8e-09 63.5 59 52.5
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.0e-08 63.2 55 54.5
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 1.3e-08 62.8 74 48.6
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 1.3e-08 62.8 58 51.7
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 1.3e-08 62.8 84 44.0
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.3e-08 62.8 59 55.9
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 2.3e-08 62.0 74 43.2
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 3.9e-08 61.2 73 46.6
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 5.1e-08 60.8 81 43.2
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 5.1e-08 60.8 63 52.4
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 5.1e-08 60.8 70 51.4
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 5.1e-08 60.8 81 40.7
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 6.6e-08 60.5 70 45.7
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 6.6e-08 60.5 61 52.5
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 6.6e-08 60.5 57 50.9
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.1e-07 59.7 67 50.7
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.1e-07 59.7 67 50.7
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 1.1e-07 59.7 83 47.0
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.1e-07 59.7 83 47.0
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.5e-07 59.3 67 50.7
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.5e-07 59.3 67 50.7
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 1.5e-07 59.3 60 53.3
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.9e-07 58.9 102 39.2
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.9e-07 58.9 68 50.0
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.5e-07 58.5 82 41.5
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 2.5e-07 58.5 86 46.5
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 3.3e-07 58.2 53 54.7
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 4.3e-07 57.8 68 45.6
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 4.3e-07 57.8 66 50.0
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 5.6e-07 57.4 63 50.8
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.6e-07 57.4 70 44.3
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.6e-07 57.4 70 44.3
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 5.6e-07 57.4 70 44.3
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 7.3e-07 57.0 72 40.3
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.3e-07 57.0 78 46.2
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 9.6e-07 56.6 63 46.0
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 9.6e-07 56.6 83 43.4
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 9.6e-07 56.6 79 49.4
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.6e-06 55.8 65 47.7
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.6e-06 55.8 79 41.8
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.6e-06 55.8 79 45.6
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 1.6e-06 55.8 69 42.0
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.6e-06 55.8 59 42.4
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.1e-06 55.5 70 40.0
Carub.0007s1942 Capsella rubella HOM05D003074 ORTHO05D002434 2.8e-06 55.1 66 37.9
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.6e-06 54.7 83 41.0
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 4.7e-06 54.3 78 43.6
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.7e-06 54.3 85 41.2
AUR62015774 Chenopodium quinoa HOM05D003074 ORTHO05D002434 6.2e-06 53.9 77 42.9
Gorai.010G252600 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.2e-06 53.9 62 40.3


User provided reference genes

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