Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.5e-56 222.6 112 100.0
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.2e-27 125.2 118 54.2
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 9.1e-22 107.1 124 47.6
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.9e-21 104.4 98 52.0
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.9e-21 104.4 98 52.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-20 103.2 104 51.9
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.9e-20 102.1 125 48.8
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.9e-20 102.1 115 47.8
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.1e-19 100.1 109 48.6
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.5e-19 99.0 104 50.0
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.5e-19 99.0 121 49.6
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 4.2e-19 98.2 120 47.5
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 4.2e-19 98.2 120 47.5
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.5e-19 97.8 129 43.4
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 7.2e-19 97.4 132 43.9
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.4e-19 97.1 129 42.6
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.7e-18 95.5 116 45.7
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.7e-18 95.5 129 41.9
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.6e-18 95.1 109 49.5
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.1e-18 94.4 123 43.9
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.1e-18 94.4 122 42.6
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 8.0e-18 94.0 122 45.9
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.0e-17 93.6 128 43.8
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.8e-17 92.8 108 45.4
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.8e-17 92.8 119 44.5
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.3e-17 92.4 119 46.2
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 2.3e-17 92.4 115 44.3
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.0e-17 91.7 131 47.3
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 5.2e-17 91.3 120 45.0
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 5.2e-17 91.3 129 44.2
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.2e-17 91.3 131 47.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.7e-17 90.9 109 46.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.8e-17 90.5 131 47.3
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.5e-16 89.7 62 64.5
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 2.0e-16 89.4 121 45.5
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 2.0e-16 89.4 115 41.7
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.0e-16 89.4 105 42.9
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 4.4e-16 88.2 131 39.7
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 7.5e-16 87.4 65 67.7
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 9.7e-16 87.0 104 44.2
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 9.7e-16 87.0 113 47.8
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.3e-15 86.7 68 61.8
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.7e-15 86.3 68 57.4
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.8e-15 85.5 104 43.3
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.8e-15 85.5 57 64.9
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.8e-15 85.5 110 42.7
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.8e-15 85.5 60 63.3
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 3.7e-15 85.1 69 58.0
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 4.8e-15 84.7 118 45.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 4.8e-15 84.7 71 57.7
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 4.8e-15 84.7 66 65.2
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 4.8e-15 84.7 112 41.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.3e-15 84.3 106 44.3
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 6.3e-15 84.3 114 45.6
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.1e-14 83.6 116 40.5
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.1e-14 83.6 88 52.3
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.1e-14 83.6 88 52.3
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 2.4e-14 82.4 63 61.9
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 2.4e-14 82.4 108 41.7
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 3.1e-14 82.0 110 41.8
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.3e-14 81.3 106 41.5
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 5.3e-14 81.3 67 58.2
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 5.3e-14 81.3 112 43.8
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 5.3e-14 81.3 97 46.4
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 5.3e-14 81.3 118 42.4
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.0e-14 80.9 62 58.1
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 7.0e-14 80.9 63 63.5
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 7.0e-14 80.9 99 44.4
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 9.1e-14 80.5 102 47.1
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 9.1e-14 80.5 102 47.1
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 9.1e-14 80.5 102 47.1
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 9.1e-14 80.5 108 42.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 9.1e-14 80.5 105 41.9
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.6e-13 79.7 55 63.6
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.6e-13 79.7 66 60.6
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.7e-13 79.0 63 54.0
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.5e-13 78.6 92 46.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 3.5e-13 78.6 63 54.0
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.5e-13 78.6 63 54.0
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.5e-13 78.6 113 40.7
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.5e-13 78.6 60 58.3
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 3.5e-13 78.6 126 42.1
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.9e-13 77.8 63 54.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 5.9e-13 77.8 112 41.1
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 7.7e-13 77.4 63 57.1
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 7.7e-13 77.4 126 38.9
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 7.7e-13 77.4 70 51.4
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.0e-12 77.0 63 57.1
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.0e-12 77.0 111 41.4
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.2e-12 75.9 102 42.2
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 2.9e-12 75.5 62 56.5
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.9e-12 75.5 63 58.7
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.9e-12 75.5 109 39.4
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.9e-12 75.5 97 47.4
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.8e-12 75.1 61 55.7
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.8e-12 75.1 123 36.6
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.8e-12 75.1 101 47.5
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 6.5e-12 74.3 53 60.4
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 8.5e-12 73.9 121 40.5
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 8.5e-12 73.9 100 39.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 8.5e-12 73.9 69 52.2
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-11 73.2 55 60.0
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-11 73.2 55 60.0
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 1.5e-11 73.2 55 60.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 1.5e-11 73.2 64 54.7
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.5e-11 73.2 68 51.5
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.9e-11 72.8 65 50.8
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.9e-11 72.8 78 50.0
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.9e-11 72.8 93 45.2
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-11 72.4 55 60.0
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-11 72.4 55 60.0
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.5e-11 72.4 71 54.9
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 3.2e-11 72.0 102 42.2
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 3.2e-11 72.0 112 36.6
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 4.2e-11 71.6 102 42.2
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 4.2e-11 71.6 102 42.2
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 4.2e-11 71.6 118 43.2
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 4.2e-11 71.6 57 59.6
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 5.5e-11 71.2 74 47.3
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 5.5e-11 71.2 97 39.2
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 7.2e-11 70.9 74 47.3
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 7.2e-11 70.9 74 47.3
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 7.2e-11 70.9 74 47.3
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 7.2e-11 70.9 74 47.3
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 7.2e-11 70.9 61 54.1
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 7.2e-11 70.9 119 37.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 7.2e-11 70.9 84 44.0
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 9.4e-11 70.5 53 58.5
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.2e-10 70.1 57 54.4
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-10 70.1 74 47.3
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-10 70.1 78 47.4
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.1e-10 69.3 74 47.3
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.1e-10 69.3 58 56.9
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-10 68.9 54 55.6
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.7e-10 68.9 50 58.0
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.6e-10 68.6 108 43.5
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 3.6e-10 68.6 58 55.2
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.7e-10 68.2 53 54.7
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 4.7e-10 68.2 65 44.6
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.7e-10 68.2 56 58.9
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 4.7e-10 68.2 52 55.8
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 6.1e-10 67.8 99 42.4
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 6.1e-10 67.8 49 57.1
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 1.4e-09 66.6 60 51.7
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-09 66.2 74 44.6
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.8e-09 66.2 74 44.6
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 2.3e-09 65.9 74 44.6
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.3e-09 65.9 73 46.6
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.3e-09 65.9 130 38.5
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.3e-09 65.9 58 53.4
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 3.0e-09 65.5 48 56.2
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-09 65.5 51 56.9
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 4.0e-09 65.1 74 44.6
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.0e-09 65.1 49 57.1
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.0e-09 65.1 65 53.8
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 5.2e-09 64.7 105 38.1
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 5.2e-09 64.7 74 43.2
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 6.8e-09 64.3 74 43.2
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 6.8e-09 64.3 57 57.9
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 8.8e-09 63.9 89 44.9
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-08 63.2 54 53.7
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.5e-08 63.2 50 56.0
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 1.5e-08 63.2 98 40.8
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.6e-08 62.4 61 49.2
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.6e-08 62.4 65 47.7
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-08 62.4 58 51.7
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-08 62.4 58 53.4
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.6e-08 62.4 58 53.4
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.4e-08 62.0 47 55.3
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.4e-08 62.0 47 55.3
SEGI_11683 Sequoiadendron giganteum HOM05D011262 ORTHO05D012767 4.4e-08 61.6 56 55.4
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.3e-07 60.1 63 49.2
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.2e-07 59.3 59 52.5
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.2e-07 59.3 59 52.5
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 3.7e-07 58.5 99 38.4
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 3.7e-07 58.5 99 38.4
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 3.7e-07 58.5 66 50.0
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.4e-06 56.6 57 45.6
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 1.4e-06 56.6 58 55.2
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 3.1e-06 55.5 45 48.9
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 4.1e-06 55.1 86 39.5
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 5.4e-06 54.7 85 37.6
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 5.4e-06 54.7 49 51.0
Lsat_1_v5_gn_4_183900 Lactuca sativa HOM05D002383 ORTHO05D002515 7.0e-06 54.3 53 49.1
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 9.1e-06 53.9 60 45.0
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 9.1e-06 53.9 60 45.0


User provided reference genes

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