Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.1e-148 530.0 273 100.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 7.2e-81 304.7 256 62.5
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.6e-80 302.4 263 60.1
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-79 300.4 263 59.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.2e-78 297.4 264 57.6
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 3.7e-77 292.4 265 58.5
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.7e-75 286.2 259 56.8
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.9e-75 285.0 262 56.1
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 7.8e-75 284.6 264 58.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 7.8e-75 284.6 259 57.9
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 6.6e-74 281.6 261 58.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 7.3e-73 278.1 273 54.2
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.5e-73 277.7 273 54.2
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.5e-73 277.7 273 54.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 2.8e-72 276.2 267 55.1
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.0e-72 274.6 271 54.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 4.0e-71 272.3 271 54.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.8e-71 271.6 271 54.2
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 6.8e-71 271.6 268 54.5
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.5e-70 270.4 268 54.1
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.0e-70 270.0 268 55.2
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.6e-70 269.6 272 51.8
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.8e-70 267.7 271 53.1
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 8.3e-69 264.6 272 53.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.1e-68 264.2 272 53.3
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.4e-68 263.8 271 52.8
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.9e-68 263.5 276 51.1
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 2.4e-68 263.1 275 51.6
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.4e-68 263.1 279 50.9
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 3.2e-68 262.7 265 53.6
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-67 260.4 244 57.4
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 7.8e-67 258.1 264 53.0
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.3e-66 257.3 271 51.7
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.0e-66 256.1 266 53.8
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 5.0e-66 255.4 279 49.8
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.6e-66 255.0 267 52.8
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.3e-65 252.7 232 56.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 9.5e-65 251.1 264 50.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.5e-65 251.1 232 56.0
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.6e-64 250.4 214 60.7
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.3e-63 246.5 267 51.3
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 3.1e-63 246.1 268 50.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 6.8e-63 245.0 255 52.9
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 9.8e-62 241.1 271 49.8
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.9e-61 239.6 259 49.4
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.4e-60 236.5 271 48.3
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 2.4e-60 236.5 261 49.0
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 4.1e-60 235.7 271 50.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.1e-60 235.7 261 49.4
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 5.4e-60 235.3 262 52.7
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 4.6e-59 232.3 268 48.1
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.3e-58 230.7 256 50.8
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.1e-58 228.8 257 49.4
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.1e-57 227.6 266 47.7
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.1e-57 227.6 258 46.9
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.5e-57 227.3 258 49.2
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 7.3e-57 224.9 261 48.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.1e-56 223.4 260 51.2
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.8e-56 223.0 256 50.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.3e-55 219.9 259 48.3
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-55 219.5 262 48.1
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 3.1e-55 219.5 257 50.2
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-54 217.2 267 48.7
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.0e-54 216.9 268 45.5
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.6e-54 216.5 260 45.4
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.4e-54 216.1 266 45.9
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 5.8e-54 215.3 260 48.8
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.8e-54 215.3 262 47.3
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.2e-53 213.4 265 45.7
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.9e-52 210.3 259 47.5
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 4.1e-52 209.1 256 46.1
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.1e-52 209.1 266 44.7
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.1e-52 209.1 264 45.1
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 7.1e-52 208.4 254 46.5
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 9.2e-52 208.0 260 45.8
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.6e-51 207.2 265 45.7
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.5e-51 206.1 264 44.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.6e-51 205.7 273 44.3
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.3e-50 204.1 263 43.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.7e-50 203.8 171 59.6
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.3e-50 203.4 271 44.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 5.1e-50 202.2 259 44.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.1e-49 201.1 256 44.5
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.3e-49 198.4 270 42.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.1e-48 196.8 254 43.3
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 3.6e-48 196.1 262 45.4
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.7e-48 195.7 268 42.5
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 4.7e-48 195.7 268 45.1
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 8.1e-48 194.9 267 42.3
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-47 194.5 200 50.0
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.4e-47 194.1 280 45.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 3.1e-47 193.0 248 47.2
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-47 193.0 198 49.0
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 5.2e-47 192.2 270 42.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 5.2e-47 192.2 273 42.1
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.0e-46 190.3 177 54.2
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.0e-46 190.3 262 44.7
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.4e-46 189.1 274 40.5
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.4e-46 189.1 274 40.5
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 7.6e-46 188.3 262 42.4
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 9.9e-46 188.0 259 44.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 2.9e-45 186.4 260 41.9
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 4.9e-45 185.7 259 43.6
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 4.9e-45 185.7 276 41.3
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 6.4e-45 185.3 260 41.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 8.4e-45 184.9 269 42.4
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 8.4e-45 184.9 269 42.4
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 8.4e-45 184.9 257 44.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.9e-44 183.7 256 41.8
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 4.2e-44 182.6 262 41.6
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 5.4e-44 182.2 255 44.3
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 9.3e-44 181.4 262 43.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.3e-44 181.4 260 41.5
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.2e-43 181.0 258 40.7
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.7e-43 179.9 272 40.1
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.5e-43 179.5 150 59.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 7.8e-43 178.3 254 40.9
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 7.8e-43 178.3 167 54.5
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.0e-42 177.9 167 55.1
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.3e-42 176.8 265 41.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.0e-42 176.4 167 53.9
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.0e-42 176.4 167 53.9
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.9e-42 176.0 167 52.7
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.1e-42 175.6 260 42.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.1e-41 174.5 264 42.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.5e-41 174.1 168 52.4
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.5e-41 173.3 168 51.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.5e-41 173.3 168 51.8
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 3.3e-41 172.9 167 51.5
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 4.3e-41 172.6 262 40.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 9.6e-41 171.4 168 51.8
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.6e-40 169.5 168 51.8
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 6.2e-40 168.7 259 41.3
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.4e-39 167.5 259 41.3
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.0e-38 163.7 268 39.2
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.6e-38 161.8 209 48.3
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.9e-37 159.8 139 56.1
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.1e-36 157.9 171 52.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.4e-36 156.8 173 47.4
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.7e-35 153.3 99 74.7
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.0e-35 152.1 116 57.8
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.3e-34 151.0 158 48.7
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.5e-33 147.5 117 59.0
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 3.3e-33 146.4 122 55.7
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 4.8e-32 142.5 147 49.7
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.8e-30 135.6 127 51.2
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 9.9e-30 134.8 161 48.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 6.4e-29 132.1 115 55.7
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.6e-22 108.6 81 64.2
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 9.3e-20 101.7 256 33.6
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.1e-19 100.5 125 42.4
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.2e-16 89.0 78 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.8e-15 87.4 298 28.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 6.9e-15 85.5 95 44.2
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 7.6e-14 82.0 308 26.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.7e-13 80.9 92 41.3
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 5.5e-12 75.9 104 34.6


User provided reference genes

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