Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.6e-153 544.3 282 100.0
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.2e-104 382.9 275 79.6
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.1e-79 299.3 278 62.9
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.6e-75 287.0 273 64.1
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 9.5e-68 261.2 217 67.7
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 6.4e-64 248.4 286 55.9
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.2e-62 244.2 293 54.6
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.7e-62 243.0 244 61.1
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 3.0e-61 239.6 293 55.3
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 9.5e-60 234.6 277 54.5
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 9.5e-60 234.6 294 53.7
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.4e-58 230.7 285 53.7
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.3e-58 229.9 284 52.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 4.0e-58 229.2 286 54.2
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 4.0e-58 229.2 260 53.8
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 5.2e-58 228.8 286 54.2
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 8.9e-58 228.0 239 57.7
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.5e-57 227.3 286 52.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.0e-57 226.9 286 54.2
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.6e-57 226.5 224 59.4
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 5.8e-57 225.3 274 54.4
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.3e-56 224.2 241 57.3
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.7e-56 223.8 262 53.1
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.9e-56 223.0 222 59.5
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.7e-56 222.6 276 52.5
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.1e-55 221.1 278 52.5
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.4e-55 219.9 272 53.3
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 4.1e-55 219.2 295 49.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 4.1e-55 219.2 276 52.2
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 3.5e-54 216.1 275 53.5
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.7e-53 213.8 272 51.1
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.9e-53 212.6 278 51.4
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 5.1e-53 212.2 197 66.0
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 8.6e-53 211.5 276 51.4
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.5e-52 209.9 270 51.9
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 4.3e-52 209.1 281 54.1
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 5.6e-52 208.8 212 55.7
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 2.1e-51 206.8 279 53.8
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.6e-51 206.1 270 53.7
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 3.6e-51 206.1 284 50.0
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 8.1e-51 204.9 193 62.2
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 8.1e-51 204.9 274 51.5
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.1e-50 204.5 263 52.5
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.0e-50 202.6 189 66.1
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.0e-50 202.6 189 66.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 4.0e-50 202.6 186 64.5
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 5.2e-50 202.2 278 51.8
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.2e-49 201.1 268 51.5
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.2e-49 201.1 189 65.6
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.5e-49 200.7 272 50.0
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 2.0e-49 200.3 226 53.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 9.9e-49 198.0 294 46.3
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.3e-48 197.6 280 52.1
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.7e-48 197.2 285 47.0
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.2e-48 196.8 264 51.9
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 6.4e-48 195.3 226 54.4
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.1e-47 194.5 196 61.7
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-47 194.1 196 63.3
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.4e-47 193.4 209 54.1
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 3.2e-47 193.0 185 61.1
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.1e-47 192.6 248 52.8
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 5.4e-47 192.2 256 50.4
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 9.2e-47 191.4 185 61.1
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.2e-46 191.0 185 60.5
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 2.1e-46 190.3 188 58.5
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.1e-46 190.3 198 56.6
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 2.1e-46 190.3 198 56.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 4.6e-46 189.1 191 59.7
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 7.8e-46 188.3 277 48.7
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.8e-46 188.3 253 49.0
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.0e-45 188.0 196 59.2
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.0e-45 188.0 281 47.3
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.7e-45 187.2 222 53.2
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.7e-45 187.2 185 59.5
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.7e-45 187.2 192 57.3
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.7e-45 187.2 245 50.6
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 2.3e-45 186.8 184 62.0
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 5.1e-45 185.7 131 78.6
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 8.6e-45 184.9 146 69.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 8.6e-45 184.9 184 60.3
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.5e-44 184.1 198 58.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.9e-44 183.7 185 58.9
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.5e-44 183.3 273 46.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.3e-44 183.0 184 62.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 5.6e-44 182.2 187 59.4
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 5.6e-44 182.2 282 46.5
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 7.3e-44 181.8 186 59.7
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 9.6e-44 181.4 215 53.0
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.6e-43 180.6 185 57.3
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.8e-43 179.9 186 58.1
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.6e-43 179.5 200 51.5
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.7e-43 179.1 266 46.6
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 6.2e-43 178.7 185 56.8
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 6.2e-43 178.7 185 56.8
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 6.2e-43 178.7 185 56.8
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.2e-43 178.7 138 73.9
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 8.1e-43 178.3 186 59.7
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.1e-42 177.9 180 57.2
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.4e-42 177.6 185 56.2
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.1e-42 176.4 181 58.0
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 4.0e-42 176.0 195 55.9
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.7e-40 170.6 189 55.0
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.2e-40 170.2 189 55.0
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.9e-40 169.9 212 50.9
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.9e-40 169.1 139 69.1
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 8.4e-40 168.3 184 57.6
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 5.4e-39 165.6 201 52.2
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.6e-38 164.1 186 53.8
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.6e-38 164.1 220 49.1
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 6.0e-38 162.2 242 44.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 6.0e-38 162.2 250 44.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.5e-36 157.5 163 56.4
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 3.3e-36 156.4 224 45.1
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 5.6e-36 155.6 299 41.1
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 5.6e-36 155.6 168 57.1
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.8e-35 153.3 102 80.4
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 6.2e-35 152.1 129 68.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.8e-34 150.6 104 78.8
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.8e-34 150.6 217 46.5
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.4e-34 150.2 104 79.8
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.2e-33 147.9 180 51.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.5e-33 147.5 144 59.7
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 5.8e-33 145.6 191 49.2
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-32 144.4 277 45.1
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-32 144.1 131 60.3
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 3.8e-32 142.9 94 81.9
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.9e-31 140.6 110 69.1
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-30 137.5 221 43.4
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 6.0e-30 135.6 132 59.8
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 5.1e-29 132.5 103 73.8
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 5.6e-28 129.0 86 81.4
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 5.3e-26 122.5 161 50.9
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 8.4e-24 115.2 151 53.0
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.2e-23 112.8 221 36.7
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-20 104.8 81 72.8
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.1e-20 104.8 223 33.6
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.6e-19 100.9 126 44.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.7e-19 99.8 217 37.8
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 2.5e-15 87.0 141 39.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 7.1e-15 85.5 49 81.6
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.6e-14 84.3 64 75.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.1e-14 84.0 136 36.8
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 6.0e-14 82.4 56 82.1
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.8e-13 80.9 53 86.8
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.3e-11 74.7 121 46.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 6.3e-11 72.4 141 36.2
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.2e-11 72.0 79 62.0
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.6e-09 67.0 41 90.2


User provided reference genes

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