Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.2e-226 787.3 384 100.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.0e-145 519.6 398 66.1
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 9.1e-138 494.2 347 68.9
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.0e-137 493.0 353 67.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.4e-137 492.3 352 68.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.4e-137 492.3 353 67.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 6.5e-136 488.0 353 66.9
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.5e-135 486.1 348 67.2
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.2e-135 485.7 353 67.1
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 9.4e-135 484.2 324 70.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 9.4e-135 484.2 352 66.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.2e-134 483.8 349 67.6
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.2e-134 483.8 353 66.9
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.1e-134 483.0 351 67.5
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.1e-134 483.0 353 66.3
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.1e-134 483.0 344 68.6
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 7.9e-134 481.1 352 67.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.0e-133 480.7 352 67.3
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.0e-133 480.7 353 66.3
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.8e-133 479.9 349 65.6
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.3e-133 479.6 352 67.6
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.0e-133 479.2 352 67.0
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.9e-133 478.8 353 66.3
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.7e-133 478.0 352 67.9
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.0e-132 476.5 365 63.6
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.6e-132 476.1 360 64.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.6e-132 476.1 346 66.8
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 4.4e-132 475.3 350 66.9
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 5.7e-132 474.9 360 65.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 5.7e-132 474.9 348 66.1
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 7.4e-132 474.6 385 61.3
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 7.4e-132 474.6 351 65.2
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 9.7e-132 474.2 343 67.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 9.7e-132 474.2 352 64.2
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 9.7e-132 474.2 353 64.9
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.3e-131 473.8 375 62.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.3e-131 473.8 318 69.5
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.7e-131 473.4 350 66.3
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.7e-131 473.4 324 69.1
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-131 473.4 324 69.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.7e-131 473.4 345 66.7
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.2e-131 473.0 358 64.8
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.8e-131 472.6 342 67.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 2.8e-131 472.6 348 65.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.8e-131 471.9 353 66.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 6.3e-131 471.5 381 62.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 6.3e-131 471.5 378 62.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 8.2e-131 471.1 324 68.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.1e-130 470.7 350 65.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.1e-130 470.7 341 66.9
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.8e-130 469.9 348 65.2
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.4e-130 469.5 351 65.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.4e-130 469.5 379 62.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-130 469.2 347 66.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.1e-130 469.2 359 63.8
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.1e-130 469.2 349 65.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 3.1e-130 469.2 324 67.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 5.3e-130 468.4 348 65.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.0e-130 468.0 356 65.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 7.0e-130 468.0 348 65.8
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.6e-129 466.1 348 65.8
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.6e-129 466.1 347 65.4
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.6e-129 466.1 351 65.8
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 3.5e-129 465.7 348 64.9
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 3.5e-129 465.7 344 66.6
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.5e-129 465.7 328 68.0
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.5e-129 465.3 348 65.5
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 4.5e-129 465.3 327 67.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 5.9e-129 464.9 365 62.5
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 7.7e-129 464.5 344 66.3
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.7e-129 464.5 350 66.3
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.0e-128 464.2 344 66.6
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.0e-128 464.2 344 66.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.0e-128 464.2 348 64.9
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.0e-128 464.2 368 61.7
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.0e-128 464.2 345 65.8
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-128 463.8 348 65.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.9e-128 462.6 330 67.3
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.9e-128 462.6 348 64.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 5.0e-128 461.8 329 66.9
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.0e-128 461.8 329 67.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 6.5e-128 461.5 366 60.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 8.5e-128 461.1 347 64.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 8.5e-128 461.1 347 64.3
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 8.5e-128 461.1 332 65.7
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.5e-127 460.3 349 65.3
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.9e-127 459.9 304 70.7
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.5e-127 459.5 309 70.9
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.5e-127 459.5 352 63.6
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 5.5e-127 458.4 298 69.8
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.1e-126 456.4 343 66.5
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.7e-126 456.1 302 71.2
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.3e-125 453.0 382 63.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 3.0e-125 452.6 326 67.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 4.0e-125 452.2 375 60.8
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 6.7e-125 451.4 348 61.5
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.5e-124 450.3 306 70.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 3.3e-124 449.1 343 65.3
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.4e-124 448.7 332 64.2
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 4.4e-124 448.7 374 59.9
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.7e-123 446.8 360 63.1
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 8.2e-123 444.5 330 64.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-122 442.6 347 63.4
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.1e-122 442.6 339 62.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.1e-122 442.2 347 61.1
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 7.0e-122 441.4 348 64.7
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 2.0e-121 439.9 377 58.6
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.7e-121 439.5 375 59.7
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 4.5e-121 438.7 343 62.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.0e-120 437.6 375 59.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.3e-120 437.2 357 63.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.3e-120 437.2 343 62.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.7e-120 436.8 333 65.5
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 3.8e-120 435.6 343 62.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.1e-118 428.3 344 62.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.8e-117 424.5 340 65.0
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.2e-116 424.1 341 60.1
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 4.1e-114 415.6 340 59.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.2e-112 409.8 321 62.6
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.9e-112 409.5 336 58.6
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.8e-112 409.1 298 63.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.5e-111 405.2 319 61.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.7e-108 395.2 230 77.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.2e-107 393.3 324 57.7
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 6.3e-107 391.7 342 58.2
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 8.3e-107 391.3 318 60.1
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.0e-100 370.2 206 81.1
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.6e-100 369.8 304 60.9
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.6e-100 369.8 344 56.1
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.2e-98 362.8 196 84.7
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.9e-96 355.9 265 64.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 8.3e-91 338.2 197 76.1
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.3e-87 326.2 314 54.8
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-86 323.9 378 48.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 3.2e-82 309.7 221 67.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 4.1e-82 309.3 179 81.0
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.6e-78 296.2 228 62.7
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 5.2e-77 292.4 397 40.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 7.1e-74 282.0 281 50.9
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.6e-70 270.8 345 40.6
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.0e-68 263.8 229 58.1
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 3.2e-66 256.5 302 44.4
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 9.3e-66 255.0 361 40.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.8e-62 243.4 221 55.2
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.4e-58 230.3 222 54.5
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.2e-58 229.9 231 51.1
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.8e-54 216.9 350 38.9
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.1e-42 178.3 125 71.2
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 8.7e-40 168.7 162 54.3
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.1e-33 146.0 148 52.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.7e-22 111.3 64 79.7
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.4e-21 107.5 56 85.7
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.2e-18 95.9 140 40.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.4e-15 85.9 94 50.0


User provided reference genes

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