Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 1.7e-44 182.6 114 100.0
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 1.4e-09 66.6 52 65.4
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 6.9e-09 64.3 57 63.2
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 9.0e-09 63.9 46 71.7
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 9.0e-09 63.9 52 63.5
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 9.0e-09 63.9 56 64.3
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 1.2e-08 63.5 39 79.5
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 2.0e-08 62.8 39 79.5
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 2.6e-08 62.4 42 73.8
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 2.6e-08 62.4 45 71.1
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 2.6e-08 62.4 46 69.6
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 7.6e-08 60.8 42 66.7
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 7.6e-08 60.8 37 81.1
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 7.6e-08 60.8 37 81.1
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 7.6e-08 60.8 37 81.1
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 9.9e-08 60.5 53 62.3
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 1.3e-07 60.1 46 67.4
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.3e-07 60.1 46 67.4
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 1.3e-07 60.1 46 67.4
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 1.3e-07 60.1 44 72.7
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 1.7e-07 59.7 46 67.4
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 1.7e-07 59.7 38 73.7
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-07 59.7 46 65.2
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-07 59.7 46 65.2
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-07 59.7 46 65.2
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 1.7e-07 59.7 50 56.0
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 2.2e-07 59.3 57 59.6
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 2.2e-07 59.3 51 58.8
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.2e-07 59.3 47 59.6
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 2.2e-07 59.3 37 81.1
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 2.9e-07 58.9 45 66.7
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 2.9e-07 58.9 37 78.4
ATR1156G029 Amborella trichopoda HOM05D007863 ORTHO05D009265 3.8e-07 58.5 41 68.3
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 3.8e-07 58.5 44 68.2
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 3.8e-07 58.5 46 67.4
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 4.9e-07 58.2 46 65.2
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 4.9e-07 58.2 52 57.7
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 4.9e-07 58.2 54 57.4
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 4.9e-07 58.2 46 65.2
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 6.4e-07 57.8 44 63.6
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 6.4e-07 57.8 50 56.0
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 6.4e-07 57.8 46 60.9
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 6.4e-07 57.8 46 63.0
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 6.4e-07 57.8 44 63.6
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 6.4e-07 57.8 44 63.6
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 8.4e-07 57.4 48 60.4
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 8.4e-07 57.4 51 56.9
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 8.4e-07 57.4 37 75.7
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 1.1e-06 57.0 48 60.4
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 1.1e-06 57.0 37 78.4
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 1.1e-06 57.0 45 62.2
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 1.4e-06 56.6 37 73.0
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 1.4e-06 56.6 50 58.0
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 1.4e-06 56.6 39 66.7
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 1.9e-06 56.2 49 59.2
HPP92_024599 Vanilla planifolia HOM05D007863 ORTHO05D009265 1.9e-06 56.2 57 52.6
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 2.4e-06 55.8 45 62.2
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 3.2e-06 55.5 34 79.4
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 4.2e-06 55.1 39 64.1
Lsat_1_v5_gn_5_132141 Lactuca sativa HOM05D007863 ORTHO05D009265 5.5e-06 54.7 51 54.9
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 5.5e-06 54.7 36 66.7


User provided reference genes

Program Settings