Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 2.8e-97 358.6 182 100.0
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.8e-75 286.2 174 83.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 4.0e-75 285.0 176 81.8
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 7.5e-74 280.8 172 82.0
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 2.2e-73 279.3 171 82.5
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.8e-72 276.2 171 80.7
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.1e-72 275.4 174 79.3
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.6e-71 273.1 174 78.7
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.0e-71 272.7 173 79.2
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.0e-71 272.7 172 78.5
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 4.5e-71 271.6 172 79.1
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.9e-71 271.2 172 79.1
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 7.7e-71 270.8 178 75.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.7e-70 269.6 172 78.5
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.8e-70 268.5 176 77.3
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.8e-70 268.5 172 79.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.0e-70 268.1 175 77.1
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 5.0e-70 268.1 171 78.9
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.5e-70 267.7 176 76.7
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 8.5e-70 267.3 171 78.4
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 8.5e-70 267.3 171 76.6
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.1e-69 266.9 171 76.0
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.9e-69 266.2 174 77.6
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.2e-69 265.0 173 76.3
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 7.2e-69 264.2 171 78.4
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-68 263.1 174 77.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 4.7e-68 261.5 172 76.7
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 8.0e-68 260.8 173 76.9
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.0e-67 260.4 182 72.5
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.0e-67 260.4 175 76.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.3e-67 259.2 169 76.9
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 5.2e-67 258.1 179 73.7
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 6.8e-67 257.7 172 75.6
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.0e-66 256.1 174 70.7
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.6e-66 255.8 173 72.8
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.6e-66 255.8 173 72.8
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 7.5e-66 254.2 176 71.6
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.7e-65 253.1 175 72.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.7e-65 253.1 177 72.9
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.7e-65 253.1 174 69.5
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 2.2e-65 252.7 171 74.3
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.3e-65 251.1 169 74.0
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 8.3e-65 250.8 175 72.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 8.3e-65 250.8 171 74.9
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.1e-64 250.4 177 67.8
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-64 250.4 173 71.7
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.4e-64 250.0 173 71.7
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.8e-64 249.6 173 71.7
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.8e-64 249.6 172 74.4
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.4e-64 249.2 175 72.0
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.4e-64 249.2 169 73.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.1e-64 248.8 169 73.4
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 4.1e-64 248.4 173 70.5
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 4.1e-64 248.4 175 71.4
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 9.2e-64 247.3 172 70.9
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.6e-63 246.5 175 70.9
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.0e-63 246.1 173 67.6
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.0e-63 246.1 177 72.3
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.0e-63 246.1 173 71.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.7e-63 245.7 181 68.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.7e-63 245.7 173 71.1
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.5e-63 245.4 177 71.2
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.5e-63 245.4 172 73.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.5e-63 245.4 184 64.1
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 4.5e-63 245.0 184 64.1
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 4.5e-63 245.0 171 73.1
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 5.9e-63 244.6 179 68.2
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 5.9e-63 244.6 171 71.9
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 5.9e-63 244.6 170 72.9
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 7.7e-63 244.2 179 68.2
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.0e-62 243.8 175 69.1
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.0e-62 243.8 177 69.5
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.3e-62 243.4 169 71.0
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.3e-62 242.7 171 71.9
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.9e-62 242.3 202 64.9
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 3.8e-62 241.9 169 71.6
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.8e-62 241.9 177 70.6
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 5.0e-62 241.5 174 69.0
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 5.0e-62 241.5 176 69.9
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.6e-62 241.1 175 65.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 6.6e-62 241.1 180 67.8
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-61 240.4 182 68.1
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.1e-61 240.4 173 69.9
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.1e-61 240.4 182 68.1
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.1e-61 240.4 178 66.3
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.5e-61 240.0 170 71.2
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.9e-61 239.6 169 70.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.5e-61 239.2 192 65.6
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 3.3e-61 238.8 172 69.2
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.3e-61 238.8 173 69.4
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.3e-61 238.8 191 61.8
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.3e-61 238.8 191 61.8
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.3e-61 238.4 171 71.9
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 4.3e-61 238.4 181 68.0
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.3e-61 238.4 183 66.7
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 7.3e-61 237.7 173 69.4
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 7.3e-61 237.7 176 67.0
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.2e-60 236.9 172 69.8
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.2e-60 236.9 172 69.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-60 236.9 175 70.3
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.2e-60 236.9 176 64.2
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.1e-60 236.1 171 71.3
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 6.1e-60 234.6 171 70.8
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 8.0e-60 234.2 180 66.1
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.0e-59 233.8 175 68.0
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.4e-59 233.4 175 67.4
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.3e-59 232.6 176 67.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 4.0e-59 231.9 177 68.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.2e-59 231.5 174 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.7e-58 228.0 173 66.5
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 9.8e-58 227.3 177 68.4
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.9e-57 224.9 175 64.0
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 4.9e-57 224.9 175 64.0
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.2e-56 222.2 173 61.8
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.1e-56 221.9 173 64.2
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.6e-55 218.4 172 65.7
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 3.0e-54 215.7 273 48.4
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.5e-53 212.6 161 66.5
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 4.3e-53 211.8 305 43.6
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 7.3e-53 211.1 135 78.5
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 7.3e-53 211.1 269 46.8
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-52 210.3 176 63.6
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.0e-51 207.2 179 59.2
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.8e-51 206.5 172 57.0
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 4.0e-51 205.3 176 62.5
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 3.4e-50 202.2 178 61.2
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.2e-41 172.9 106 81.1
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.9e-40 169.9 111 75.7
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 2.4e-40 169.5 119 72.3
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.4e-40 169.5 117 72.6
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 6.0e-39 164.9 106 76.4
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-37 160.2 104 76.9
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 3.1e-35 152.5 104 74.0
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 5.2e-35 151.8 112 68.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.6e-34 149.4 106 70.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 6.4e-33 144.8 120 65.0
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 3.9e-30 135.6 113 61.1
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.2e-28 130.6 84 76.2
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-26 124.0 79 79.7
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 4.4e-26 122.1 145 42.1
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.6e-23 113.6 101 60.4
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.7e-23 112.8 123 56.1
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 6.0e-23 111.7 144 47.2
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.3e-22 109.8 61 86.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 5.1e-22 108.6 64 82.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 7.3e-21 104.8 63 79.4
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 7.3e-21 104.8 63 79.4
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 4.8e-20 102.1 60 81.7
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.2e-18 97.4 81 63.0
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.5e-13 79.7 57 71.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.3e-13 79.3 82 50.0
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 9.0e-11 71.2 47 76.6
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 1.3e-09 67.4 168 33.3
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 3.9e-06 55.8 41 68.3


User provided reference genes

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