Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 8.1e-79 297.0 147 100.0
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 8.0e-26 120.9 146 54.8
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 4.0e-17 92.0 141 46.1
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 7.5e-16 87.8 143 42.7
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 1.7e-15 86.7 140 45.0
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 2.2e-15 86.3 146 45.9
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 3.7e-15 85.5 141 44.7
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 6.3e-15 84.7 141 42.6
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 8.3e-15 84.3 141 45.4
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 1.1e-14 84.0 151 41.1
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 1.4e-14 83.6 141 42.6
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 1.4e-14 83.6 141 42.6
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.8e-14 83.2 141 42.6
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 2.4e-14 82.8 138 42.0
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.4e-14 82.8 140 42.1
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 2.4e-14 82.8 144 41.0
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.4e-14 82.8 141 41.8
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.1e-14 82.4 143 42.0
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 4.1e-14 82.0 143 41.3
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 4.1e-14 82.0 141 41.1
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 4.1e-14 82.0 141 41.1
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 5.4e-14 81.6 143 42.0
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 7.0e-14 81.3 141 41.1
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 9.2e-14 80.9 140 41.4
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 9.2e-14 80.9 141 44.0
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.2e-13 80.5 141 41.8
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-13 80.5 141 43.3
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-13 80.5 141 43.3
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-13 80.5 141 43.3
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 1.6e-13 80.1 149 40.3
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.6e-13 80.1 142 41.5
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.6e-13 80.1 138 41.3
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 2.0e-13 79.7 141 40.4
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 2.7e-13 79.3 146 40.4
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 2.7e-13 79.3 141 40.4
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 2.7e-13 79.3 141 41.1
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.7e-13 79.3 146 42.5
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 3.5e-13 79.0 143 39.9
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 4.5e-13 78.6 147 39.5
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 4.5e-13 78.6 140 40.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 4.5e-13 78.6 146 40.4
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 4.5e-13 78.6 143 39.9
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 4.5e-13 78.6 143 39.9
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 5.9e-13 78.2 143 39.2
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 5.9e-13 78.2 147 39.5
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 5.9e-13 78.2 140 40.7
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 7.8e-13 77.8 143 39.2
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 7.8e-13 77.8 140 40.7
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 7.8e-13 77.8 143 40.6
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 7.8e-13 77.8 141 40.4
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.0e-12 77.4 142 41.5
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.3e-12 77.0 141 41.1
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 1.7e-12 76.6 136 40.4
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.7e-12 76.6 141 42.6
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.7e-12 76.6 138 39.9
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.7e-12 76.6 138 41.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 2.3e-12 76.3 141 39.7
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.3e-12 76.3 141 38.3
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 2.9e-12 75.9 141 41.1
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.9e-12 75.9 140 38.6
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.8e-12 75.5 140 38.6
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 5.0e-12 75.1 141 39.7
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 5.0e-12 75.1 141 39.7
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 5.0e-12 75.1 141 39.7
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 5.0e-12 75.1 141 41.8
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 6.6e-12 74.7 141 39.7
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 6.6e-12 74.7 141 41.1
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 6.6e-12 74.7 141 41.8
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.6e-12 74.7 141 41.8
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 8.6e-12 74.3 146 39.0
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 8.6e-12 74.3 145 38.6
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 8.6e-12 74.3 143 39.9
MBI07_g26015_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 8.6e-12 74.3 75 46.7
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 8.6e-12 74.3 146 39.0
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.5e-11 73.6 140 39.3
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.5e-11 73.6 146 39.7
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 1.5e-11 73.6 146 38.4
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.9e-11 73.2 146 39.7
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.9e-11 73.2 141 40.4
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.9e-11 73.2 141 40.4
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.9e-11 73.2 141 40.4
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.9e-11 73.2 141 39.7
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.5e-11 72.8 145 37.9
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 4.3e-11 72.0 141 39.0
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 5.6e-11 71.6 146 37.7
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 5.6e-11 71.6 146 39.7
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 7.3e-11 71.2 146 38.4
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 9.5e-11 70.9 146 37.0
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.2e-10 70.5 154 39.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.2e-10 70.5 146 38.4
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.6e-10 70.1 55 72.7
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.6e-10 70.1 140 36.4
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.1e-10 69.7 141 36.9
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.8e-10 69.3 56 71.4
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 6.1e-10 68.2 146 37.0
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 1.0e-09 67.4 141 37.6
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.4e-09 67.0 56 69.6
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.8e-09 66.6 56 69.6
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-09 66.6 55 74.5
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 3.1e-09 65.9 57 66.7
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 4.0e-09 65.5 146 37.0
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 4.0e-09 65.5 146 37.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 4.0e-09 65.5 146 37.0
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 4.0e-09 65.5 50 72.0
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.2e-08 63.9 142 36.6
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.4e-08 62.4 146 36.3
MBI11_g22244_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.4e-08 62.4 61 50.8
MBI16_g07981_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.4e-08 62.0 46 56.5
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 7.5e-08 61.2 56 64.3
MBI01_g01371_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 9.8e-08 60.8 66 36.4
MBI07_g34150_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 9.8e-08 60.8 77 37.7
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 9.8e-08 60.8 74 40.5
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 9.8e-08 60.8 146 34.9
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.3e-07 60.5 45 53.3
MBI19_g09385_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.7e-07 58.9 46 52.2
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.9e-07 58.5 55 69.1
MBI01_g26131_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.9e-07 58.5 93 34.4
MBI09_g32374_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.9e-07 58.5 50 44.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 4.9e-07 58.5 56 66.1
MBI18_g09618_MAGBIO Magnolia biondii HOM05D003136 ORTHO05D003562 6.4e-07 58.2 45 55.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.4e-06 57.0 74 36.5
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.9e-06 56.6 43 79.1
MBI12_g15033_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.9e-06 56.6 75 36.0
MBI18_g24955_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.9e-06 56.6 74 36.5
QL02p018534 Quercus lobata HOM05D000003 ORTHO05D000004 1.9e-06 56.6 80 36.2
QL03p039930 Quercus lobata HOM05D000003 ORTHO05D000004 1.9e-06 56.6 80 35.0
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 2.4e-06 56.2 47 46.8
PSO386G0076 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-06 56.2 56 42.9
QL10p019376 Quercus lobata HOM05D000003 ORTHO05D000004 2.4e-06 56.2 74 37.8
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 3.2e-06 55.8 140 35.7
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 4.1e-06 55.5 80 36.2
QL10p041044 Quercus lobata HOM05D000189 ORTHO05D004078 4.1e-06 55.5 80 36.2
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 7.0e-06 54.7 50 42.0
MBI11_g01322_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.0e-06 54.7 75 37.3
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 9.2e-06 54.3 146 33.6
MBI07_g28646_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 9.2e-06 54.3 89 33.7


User provided reference genes

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