Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 5.8e-36 153.7 77 100.0
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.4e-34 148.3 77 97.4
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.7e-22 107.8 66 80.3
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 8.2e-22 106.7 68 83.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 4.5e-20 100.9 67 71.6
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.7e-19 99.0 66 71.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.0e-19 97.4 67 68.7
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 6.5e-19 97.1 66 68.2
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 8.5e-19 96.7 66 69.7
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 8.5e-19 96.7 67 70.1
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-18 96.3 66 68.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-18 95.9 67 67.2
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.4e-18 95.9 66 66.7
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.4e-18 95.9 69 63.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.9e-18 95.5 66 68.2
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.9e-18 95.5 66 66.7
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.9e-18 95.5 69 65.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.9e-18 95.5 67 65.7
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 2.5e-18 95.1 67 65.7
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 2.5e-18 95.1 66 69.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.2e-18 94.4 67 65.7
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.2e-18 94.4 67 65.7
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 5.5e-18 94.0 67 65.7
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 7.2e-18 93.6 69 62.3
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 9.3e-18 93.2 69 60.9
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.2e-17 92.8 67 62.7
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.1e-17 92.0 70 67.1
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.1e-17 92.0 66 66.7
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.1e-17 92.0 67 64.2
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.7e-17 91.7 66 65.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.7e-17 91.7 66 65.2
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 2.7e-17 91.7 69 66.7
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.7e-17 91.7 67 62.7
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 67.2
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 4.6e-17 90.9 66 66.7
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 4.6e-17 90.9 67 65.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.6e-17 90.9 67 65.7
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 7.9e-17 90.1 67 67.2
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 7.9e-17 90.1 66 66.7
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 7.9e-17 90.1 66 65.2
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 1.0e-16 89.7 67 67.2
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.3e-16 89.4 67 61.2
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.3e-16 89.4 67 62.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.3e-16 89.4 69 63.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 2.3e-16 88.6 74 58.1
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.3e-16 88.6 67 65.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.3e-16 88.6 67 65.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.3e-16 88.6 66 65.2
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.9e-16 87.8 67 62.7
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 3.9e-16 87.8 74 52.7
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.9e-16 87.8 66 63.6
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 5.1e-16 87.4 66 63.6
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.1e-16 87.4 67 62.7
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 5.1e-16 87.4 67 62.7
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 5.1e-16 87.4 67 62.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 6.7e-16 87.0 70 61.4
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 6.7e-16 87.0 66 68.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 6.7e-16 87.0 69 56.5
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 6.7e-16 87.0 67 61.2
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 8.7e-16 86.7 69 63.8
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.5e-15 85.9 67 62.7
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.5e-15 85.9 67 62.7
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.9e-15 85.5 66 60.6
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.9e-15 85.5 67 61.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.5e-15 85.1 67 61.2
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.5e-15 85.1 67 61.2
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 3.3e-15 84.7 74 52.7
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 4.3e-15 84.3 67 61.2
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 64.2
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 62.7
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 62.7
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 62.7
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 61.2
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 61.2
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 62.7
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 7.4e-15 83.6 74 51.4
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 7.4e-15 83.6 76 55.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 9.7e-15 83.2 68 57.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 9.7e-15 83.2 66 60.6
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.3e-14 82.8 67 59.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.3e-14 82.8 67 61.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.3e-14 82.8 67 59.7
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.6e-14 82.4 67 59.7
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.6e-14 82.4 67 52.2
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.2e-14 82.0 66 59.1
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.8e-14 81.6 66 59.1
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 3.7e-14 81.3 67 62.7
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 3.7e-14 81.3 68 57.4
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.1e-13 79.7 67 58.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.1e-13 79.7 67 58.2
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.8e-13 79.0 67 58.2
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 2.4e-13 78.6 74 47.3
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 3.1e-13 78.2 67 61.2
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.1e-13 77.8 67 56.7
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.1e-13 77.8 67 56.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 6.9e-13 77.0 67 59.7
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 9.1e-13 76.6 66 53.0
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 9.1e-13 76.6 67 53.7
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 9.1e-13 76.6 74 45.9
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 4.5e-12 74.3 75 45.3
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 5.9e-12 73.9 76 48.7
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 1.3e-11 72.8 77 45.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.7e-11 72.4 67 52.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-11 72.4 70 52.9
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.2e-11 72.0 66 50.0
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.2e-11 72.0 73 49.3
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 2.2e-11 72.0 69 47.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 6.5e-11 70.5 67 50.7
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 6.5e-11 70.5 68 51.5
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 4.2e-10 67.8 66 47.0
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-10 67.0 68 50.0
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 2.7e-09 65.1 67 50.7
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 2.7e-09 65.1 67 50.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.6e-09 64.7 67 49.3
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 3.6e-09 64.7 62 50.0
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.1e-09 63.9 77 40.3
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 3.0e-08 61.6 67 47.8
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 3.9e-08 61.2 67 43.3
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.1e-07 59.7 68 44.1
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.1e-07 59.7 68 44.1
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.6e-07 58.5 67 44.8
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.6e-07 58.5 47 59.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 2.8e-06 55.1 67 41.8


User provided reference genes

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