Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.7e-103 379.8 255 100.0
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.7e-103 379.8 255 100.0
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 2.0e-101 372.9 255 98.8
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 2.7e-69 266.2 260 73.1
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.7e-55 220.3 253 69.6
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 2.9e-55 219.5 206 77.7
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 6.4e-55 218.4 253 68.8
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.4e-55 218.4 253 68.4
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 8.3e-55 218.0 253 68.8
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.2e-54 216.1 253 60.9
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 5.4e-54 215.3 251 64.5
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.1e-54 214.9 253 60.9
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 9.2e-54 214.5 206 74.3
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 3.5e-53 212.6 253 64.4
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.3e-52 210.7 252 71.8
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 6.6e-52 208.4 256 57.4
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.6e-51 205.3 210 73.8
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.6e-51 205.3 210 73.8
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 5.6e-51 205.3 251 60.2
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.2e-50 204.1 253 64.0
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 5.2e-49 198.7 222 72.5
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.5e-48 197.2 252 62.7
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.6e-48 196.4 261 60.9
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 3.4e-48 196.1 255 63.5
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 1.7e-47 193.7 251 57.8
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-46 191.0 248 61.7
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.4e-46 188.7 267 57.3
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 9.2e-46 188.0 207 70.0
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 7.8e-45 184.9 237 65.4
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.7e-44 183.7 148 75.7
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.3e-44 183.3 253 60.5
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 3.9e-44 182.6 147 75.5
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.5e-43 180.6 149 77.9
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 4.3e-43 179.1 258 61.2
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.8e-42 176.4 254 49.2
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.4e-41 174.1 264 60.6
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 2.4e-41 173.3 254 50.8
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 5.2e-41 172.2 207 58.0
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.2e-40 171.0 254 54.7
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.2e-40 171.0 208 74.0
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 5.8e-40 168.7 212 62.7
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 2.9e-39 166.4 253 63.6
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.8e-39 166.0 147 68.7
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.4e-38 164.1 207 62.8
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 1.9e-38 163.7 147 72.1
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 4.2e-38 162.5 261 53.6
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 9.3e-38 161.4 232 57.3
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.6e-37 160.6 150 75.3
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.1e-37 160.2 210 61.0
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 2.7e-37 159.8 152 71.7
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.6e-37 159.1 251 49.0
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 4.6e-37 159.1 151 66.9
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 6.0e-37 158.7 148 70.3
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 7.8e-37 158.3 150 72.7
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-36 157.9 150 72.7
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-36 157.9 150 72.7
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.0e-36 157.9 150 72.7
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.0e-36 157.9 150 72.7
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.0e-36 157.9 149 73.8
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.0e-36 156.4 150 72.7
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 3.0e-36 156.4 253 53.8
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 3.9e-36 156.0 254 50.0
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.1e-36 155.6 150 72.0
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.6e-36 155.2 150 71.3
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 6.6e-36 155.2 144 69.4
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 8.7e-36 154.8 255 55.7
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 8.7e-36 154.8 263 54.8
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 8.7e-36 154.8 150 70.7
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.1e-35 154.5 251 54.2
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.5e-35 153.3 149 72.5
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 7.3e-35 151.8 251 53.8
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-34 151.0 261 50.6
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-34 151.0 261 50.6
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.3e-34 151.0 250 50.0
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.6e-34 150.6 298 44.3
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.6e-34 150.6 214 61.2
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 2.1e-34 150.2 150 71.3
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.1e-34 150.2 254 51.2
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 2.8e-34 149.8 152 63.2
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 3.6e-34 149.4 254 45.7
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 8.1e-34 148.3 143 66.4
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 8.1e-34 148.3 150 69.3
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.1e-33 147.9 150 69.3
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.4e-33 147.5 257 57.6
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.8e-33 147.1 224 50.0
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.4e-33 146.7 149 69.1
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 4.0e-33 146.0 101 66.3
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 6.9e-33 145.2 155 65.8
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 9.0e-33 144.8 257 56.8
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 1.5e-32 144.1 102 69.6
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.0e-32 143.7 244 52.5
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 2.6e-32 143.3 207 63.3
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.6e-32 143.3 151 63.6
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 5.8e-32 142.1 148 68.9
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 9.9e-32 141.4 101 66.3
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.3e-31 141.0 255 51.4
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.3e-31 141.0 254 53.1
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.3e-31 141.0 251 51.8
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.2e-31 140.2 93 68.8
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 2.2e-31 140.2 100 68.0
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 3.8e-31 139.4 104 68.3
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.9e-30 137.1 257 52.5
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.9e-30 137.1 100 69.0
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 2.4e-30 136.7 98 67.3
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.2e-30 136.3 257 51.4
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 3.2e-30 136.3 226 52.2
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 5.4e-30 135.6 154 48.1
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 5.4e-30 135.6 251 52.2
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 7.1e-30 135.2 160 61.2
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 7.1e-30 135.2 255 54.5
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 7.1e-30 135.2 255 54.5
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 9.3e-30 134.8 97 66.0
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 3.5e-29 132.9 250 53.2
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 6.0e-29 132.1 159 61.6
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.0e-28 131.3 147 61.9
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.3e-28 131.0 102 63.7
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.7e-28 130.6 201 56.7
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 6.6e-28 128.6 104 63.5
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 8.7e-28 128.3 255 59.2
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 8.7e-28 128.3 205 57.6
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 1.1e-27 127.9 255 58.4
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.1e-27 127.9 265 41.1
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 1.9e-27 127.1 255 58.8
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.9e-27 127.1 96 63.5
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.9e-27 127.1 265 48.3
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.9e-27 127.1 209 58.4
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.3e-27 125.9 163 60.7
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 5.6e-27 125.6 154 49.4
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 7.3e-27 125.2 207 50.2
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 1.3e-26 124.4 253 37.9
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 2.1e-26 123.6 106 61.3
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.8e-26 123.2 255 47.8
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.2e-26 122.1 255 48.2
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 6.2e-26 122.1 149 58.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.4e-25 120.9 149 60.4
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.4e-25 120.9 206 51.9
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 2.4e-25 120.2 142 66.2
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 4.0e-25 119.4 150 58.7
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 4.0e-25 119.4 104 60.6
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 5.3e-25 119.0 149 57.7
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 5.3e-25 119.0 255 58.0
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 2.0e-24 117.1 141 63.8
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 3.4e-24 116.3 252 42.1
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 2.2e-23 113.6 250 50.0
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 2.9e-23 113.2 97 56.7
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 3.8e-23 112.8 145 59.3
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 6.4e-23 112.1 145 52.4
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.1e-22 111.3 119 52.9
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 1.4e-22 110.9 116 51.7
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.9e-22 110.5 103 60.2
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.2e-22 109.8 80 65.0
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 9.3e-22 108.2 227 50.2
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 9.3e-22 108.2 134 65.7
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 6.7e-20 102.1 208 51.9
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 6.7e-20 102.1 208 51.9
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 6.7e-20 102.1 208 51.9
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.1e-19 101.3 95 53.7
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.5e-19 100.9 97 51.5
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.9e-19 100.5 261 45.2
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 7.4e-19 98.6 99 50.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.3e-18 97.8 99 52.5
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.6e-18 97.4 81 60.5
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.8e-18 96.7 98 53.1
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.7e-18 96.3 257 46.3
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 4.8e-18 95.9 98 53.1
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 6.2e-18 95.5 261 45.2
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.1e-17 94.7 98 53.1
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 2.4e-17 93.6 94 50.0
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 2.4e-17 93.6 94 50.0
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 2.0e-16 90.5 95 52.6
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 2.6e-16 90.1 261 44.1
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 4.5e-16 89.4 109 45.0
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 4.5e-16 89.4 109 45.0
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 5.8e-16 89.0 109 45.0
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 7.6e-16 88.6 99 48.5
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 2.9e-15 86.7 106 45.3
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 3.8e-15 86.3 208 47.6
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 6.5e-15 85.5 103 44.7
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 1.3e-12 77.8 211 56.9
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 2.3e-12 77.0 136 72.8
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.3e-12 77.0 105 44.8
C06p07680 Brassica napus HOM05D001239 ORTHO05D000925 2.5e-11 73.6 47 74.5
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.8e-10 70.1 102 64.7
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.1e-09 68.2 78 75.6
BraA07t29361Z Brassica rapa HOM05D003453 ORTHO05D042392 1.0e-07 61.6 46 67.4
Gorai.005G178200 Gossypium raimondii HOM05D002488 ORTHO05D002613 3.2e-06 56.6 44 61.4
BcaC08g43401 Brassica carinata HOM05D003453 ORTHO05D004154 9.3e-06 55.1 71 43.7
C06p07690 Brassica napus HOM05D003453 ORTHO05D004154 9.3e-06 55.1 71 43.7


User provided reference genes

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