Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 6.2e-31 137.1 84 100.0
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 2.2e-20 102.1 77 89.6
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 6.8e-14 80.5 47 93.6
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 6.8e-14 80.5 51 82.4
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.4e-13 77.8 51 78.4
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 4.4e-13 77.8 51 80.4
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 7.6e-13 77.0 50 80.0
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.3e-12 76.3 68 63.2
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.3e-12 76.3 51 82.4
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 2.9e-12 75.1 51 78.4
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.9e-12 75.1 51 78.4
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.9e-12 75.1 51 74.5
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 3.8e-12 74.7 50 80.0
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 4.9e-12 74.3 49 79.6
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 6.4e-12 73.9 52 75.0
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 8.4e-12 73.6 50 78.0
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 8.4e-12 73.6 50 78.0
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 8.4e-12 73.6 50 78.0
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.4e-11 72.8 50 78.0
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.4e-11 72.8 51 74.5
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 1.4e-11 72.8 51 76.5
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.9e-11 72.4 51 76.5
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.9e-11 72.4 50 76.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.9e-11 72.4 48 81.2
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 2.4e-11 72.0 50 76.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.4e-11 72.0 49 79.6
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.4e-11 72.0 49 79.6
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 2.4e-11 72.0 46 82.6
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 2.4e-11 72.0 46 82.6
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 3.2e-11 71.6 51 80.4
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 3.2e-11 71.6 51 80.4
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.2e-11 71.6 49 77.6
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 5.4e-11 70.9 51 74.5
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 7.1e-11 70.5 51 74.5
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 9.2e-11 70.1 48 77.1
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.2e-10 69.7 48 77.1
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.6e-10 69.3 43 81.4
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 2.1e-10 68.9 47 80.9
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 2.1e-10 68.9 51 72.5
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 70.6
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 70.6
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 72.5
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.7e-10 68.6 48 75.0
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 2.7e-10 68.6 48 75.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 66.7
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 72.5
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 72.5
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.7e-10 68.6 51 72.5
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.7e-10 68.6 44 81.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.5e-10 68.2 47 76.6
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 3.5e-10 68.2 47 76.6
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 4.6e-10 67.8 51 68.6
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 4.6e-10 67.8 51 72.5
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 6.0e-10 67.4 47 74.5
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 6.0e-10 67.4 48 72.9
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 6.0e-10 67.4 51 66.7
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.0e-10 67.4 42 83.3
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 6.0e-10 67.4 51 74.5
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 7.8e-10 67.0 58 67.2
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 7.8e-10 67.0 48 75.0
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 1.0e-09 66.6 48 70.8
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.0e-09 66.6 50 72.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.3e-09 66.2 41 82.9
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.7e-09 65.9 41 82.9
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 2.3e-09 65.5 49 71.4
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.3e-09 65.5 48 72.9
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.3e-09 65.5 48 72.9
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 5.1e-09 64.3 48 72.9
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 5.1e-09 64.3 42 81.0
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 5.1e-09 64.3 42 81.0
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 5.1e-09 64.3 45 73.3
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 6.6e-09 63.9 41 80.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 6.6e-09 63.9 50 68.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 8.7e-09 63.5 51 68.6
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.1e-08 63.2 48 68.8
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.1e-08 63.2 42 78.6
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.1e-08 63.2 49 71.4
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.5e-08 62.8 43 76.7
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.9e-08 62.4 37 86.5
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.9e-08 62.4 37 86.5
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.9e-08 62.4 43 76.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.9e-08 62.4 47 74.5
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.5e-08 62.0 46 71.7
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 2.5e-08 62.0 43 74.4
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 2.5e-08 62.0 43 74.4
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 2.5e-08 62.0 43 74.4
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 3.3e-08 61.6 51 68.6
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 3.3e-08 61.6 48 66.7
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.3e-08 61.6 43 74.4
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 3.3e-08 61.6 43 74.4
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.3e-08 61.2 42 73.8
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 4.3e-08 61.2 41 78.0
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 4.3e-08 61.2 39 79.5
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 5.6e-08 60.8 51 68.6
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.6e-08 60.8 50 64.0
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.6e-08 60.8 50 64.0
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 5.6e-08 60.8 50 70.0
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 7.3e-08 60.5 48 70.8
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.3e-08 60.5 43 74.4
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.2e-07 59.7 40 77.5
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 1.2e-07 59.7 43 74.4
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.2e-07 59.7 50 68.0
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.2e-07 59.7 43 72.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-07 59.7 40 77.5
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-07 59.7 40 77.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.6e-07 59.3 39 74.4
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.6e-07 59.3 43 72.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.1e-07 58.9 48 62.5
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-07 58.9 51 66.7
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 2.1e-07 58.9 51 66.7
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.1e-07 58.9 43 72.1
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.8e-07 58.5 40 75.0
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.8e-07 58.5 40 75.0
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.8e-07 58.5 43 72.1
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 3.6e-07 58.2 43 69.8
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 3.6e-07 58.2 43 69.8
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 3.6e-07 58.2 43 69.8
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 3.6e-07 58.2 43 69.8
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.6e-07 58.2 40 75.0
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.6e-07 58.2 49 67.3
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.7e-07 57.8 43 69.8
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 4.7e-07 57.8 43 69.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.7e-07 57.8 43 69.8
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 6.2e-07 57.4 43 69.8
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.4e-06 56.2 42 71.4
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 2.4e-06 55.5 43 67.4
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.4e-06 55.5 40 70.0
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 2.4e-06 55.5 37 75.7
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.1e-06 55.1 51 62.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 3.1e-06 55.1 44 65.9
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 3.1e-06 55.1 44 65.9
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 4.0e-06 54.7 43 67.4
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.2e-06 54.3 51 60.8
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 5.2e-06 54.3 44 63.6
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 5.2e-06 54.3 51 60.8
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 6.9e-06 53.9 41 65.9
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 6.9e-06 53.9 39 69.2
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 9.0e-06 53.5 40 70.0


User provided reference genes

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