Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.9e-71 272.3 202 100.0
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 5.8e-51 204.9 207 66.2
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.3e-50 203.8 206 69.4
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 8.3e-50 201.1 206 67.0
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 8.3e-50 201.1 195 73.3
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 3.5e-48 195.7 205 68.3
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 4.6e-48 195.3 203 64.5
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.0e-47 194.1 204 69.1
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.6e-47 191.4 204 65.2
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 8.6e-47 191.0 204 65.7
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.1e-46 190.7 208 66.3
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.9e-46 189.9 204 61.8
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 7.3e-46 188.0 200 60.0
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 9.6e-46 187.6 204 61.3
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.2e-45 187.2 203 55.7
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.2e-45 187.2 199 64.8
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.1e-45 186.4 204 60.3
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 3.6e-45 185.7 205 60.5
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 4.7e-45 185.3 195 68.2
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.7e-45 185.3 205 63.9
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 8.1e-45 184.5 200 71.5
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.1e-44 184.1 200 60.5
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.4e-44 183.7 201 55.7
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.4e-44 183.7 200 66.5
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.4e-44 183.7 208 61.1
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.8e-44 183.3 203 60.1
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.1e-44 182.6 203 63.5
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 4.0e-44 182.2 204 60.3
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.2e-43 180.6 201 66.7
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.5e-43 180.3 198 64.1
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.5e-43 180.3 203 58.6
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.6e-43 179.5 204 58.8
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 2.6e-43 179.5 204 57.8
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 4.4e-43 178.7 204 53.9
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 5.8e-43 178.3 203 56.7
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 5.8e-43 178.3 205 61.0
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 5.8e-43 178.3 203 58.1
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 5.8e-43 178.3 203 60.1
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 7.6e-43 177.9 202 56.9
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 9.9e-43 177.6 204 65.7
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 9.9e-43 177.6 200 59.0
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.3e-42 177.2 202 64.9
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.7e-42 176.8 205 65.4
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.7e-42 176.8 203 63.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.7e-42 176.8 204 65.2
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.2e-42 176.4 199 65.3
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 2.9e-42 176.0 202 63.4
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 3.8e-42 175.6 204 65.7
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 3.8e-42 175.6 204 57.8
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 4.9e-42 175.3 204 67.2
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.9e-41 173.3 201 64.7
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.9e-41 173.3 203 59.1
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.9e-41 173.3 203 59.6
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.4e-41 172.9 204 64.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 4.2e-41 172.2 203 62.1
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 4.2e-41 172.2 200 61.5
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 4.2e-41 172.2 204 63.7
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 5.4e-41 171.8 203 56.7
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 9.3e-41 171.0 206 62.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.2e-40 170.6 205 63.9
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.2e-40 170.6 203 53.7
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.2e-40 170.6 203 57.1
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.1e-40 169.9 203 53.7
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.1e-40 169.9 203 53.7
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 4.6e-40 168.7 203 53.2
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 4.6e-40 168.7 200 66.5
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 7.8e-40 167.9 200 69.0
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 7.8e-40 167.9 191 58.6
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.7e-39 166.8 202 63.9
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.3e-39 166.4 201 56.2
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.0e-39 166.0 200 64.0
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 3.9e-39 165.6 204 54.9
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.6e-39 164.9 200 64.5
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 6.6e-39 164.9 208 62.0
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 8.7e-39 164.5 205 55.6
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.1e-38 164.1 206 68.0
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.5e-38 163.7 200 58.0
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.9e-38 163.3 202 56.9
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.9e-38 163.3 202 56.9
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.9e-38 163.3 202 56.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.5e-38 162.9 201 62.7
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 3.3e-38 162.5 202 64.4
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.3e-38 162.2 203 55.7
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 5.6e-38 161.8 200 64.0
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.6e-38 161.8 203 62.1
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 9.6e-38 161.0 208 61.5
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 2.8e-37 159.5 204 60.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 3.6e-37 159.1 202 62.4
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 3.6e-37 159.1 202 55.9
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 3.6e-37 159.1 202 60.4
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 3.6e-37 159.1 202 55.9
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 4.8e-37 158.7 199 59.3
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.4e-36 157.1 200 60.5
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.4e-36 157.1 198 61.6
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.4e-36 157.1 198 61.6
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.3e-36 155.2 200 65.0
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 6.9e-36 154.8 201 60.2
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 9.0e-36 154.5 204 54.9
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 7.6e-35 151.4 202 60.4
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 3.2e-33 146.0 204 47.5
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.0e-31 141.0 144 67.4
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.3e-31 140.6 138 65.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.3e-31 140.6 201 60.2
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.3e-31 139.8 148 72.3
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.1e-31 138.7 138 64.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.1e-30 137.5 202 62.4
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.9e-30 136.7 202 57.4
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 3.3e-30 136.0 202 52.0
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 4.0e-28 129.0 201 49.3
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 9.0e-28 127.9 206 68.0
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 2.6e-27 126.3 192 43.8
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.9e-26 122.9 195 44.1
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 4.9e-26 122.1 179 46.4
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-23 113.6 179 44.1
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.0e-23 112.8 179 44.1
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-22 109.4 170 50.6
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 3.7e-21 105.9 133 50.4
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 4.8e-21 105.5 139 48.2
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.1e-20 104.4 145 48.3
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.4e-20 103.2 195 57.4
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 9.0e-20 101.3 106 77.4
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-19 100.1 139 46.8
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.4e-19 99.4 139 48.2
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.9e-18 96.3 109 53.2
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 4.9e-18 95.5 139 45.3
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 4.2e-17 92.4 109 51.4
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 6.0e-16 88.6 122 56.6
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.8e-13 79.7 114 64.9
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 9.0e-12 74.7 97 47.4
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 2.2e-10 70.1 193 40.4
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.1e-09 67.8 134 38.8
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.9e-09 67.0 76 55.3
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.7e-08 63.2 79 49.4
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.1e-06 57.8 76 48.7


User provided reference genes

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