Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 5.2e-22 108.2 53 100.0
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 1.5e-13 80.1 48 75.0
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 2.2e-12 76.3 48 70.8
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 2.2e-12 76.3 48 70.8
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 4.9e-12 75.1 48 70.8
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 1.4e-11 73.6 44 75.0
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 4.2e-11 72.0 43 76.7
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 5.4e-11 71.6 48 68.8
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 7.1e-11 71.2 48 66.7
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 9.3e-11 70.9 48 66.7
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 9.3e-11 70.9 51 64.7
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 1.6e-10 70.1 46 69.6
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 1.6e-10 70.1 45 71.1
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.6e-10 70.1 53 66.0
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.6e-10 70.1 53 66.0
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 2.1e-10 69.7 44 72.7
Dinv33354 Davidia involucrata HOM05D000135 ORTHO05D000816 4.6e-10 68.6 48 70.8
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 4.6e-10 68.6 44 68.2
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 7.9e-10 67.8 46 67.4
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 7.9e-10 67.8 45 68.9
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 7.9e-10 67.8 45 68.9
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 7.9e-10 67.8 45 66.7
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 7.9e-10 67.8 45 66.7
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.0e-09 67.4 48 64.6
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.0e-09 67.4 48 64.6
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 1.3e-09 67.0 53 62.3
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 1.8e-09 66.6 46 65.2
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 1.8e-09 66.6 53 62.3
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 1.8e-09 66.6 45 68.9
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 2.3e-09 66.2 46 69.6
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 2.3e-09 66.2 45 66.7
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.3e-09 66.2 53 62.3
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.3e-09 66.2 52 63.5
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.3e-09 66.2 53 62.3
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 2.3e-09 66.2 48 62.5
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 3.0e-09 65.9 46 67.4
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.0e-09 65.9 49 63.3
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 3.9e-09 65.5 50 68.0
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 3.9e-09 65.5 45 68.9
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 5.1e-09 65.1 53 62.3
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 5.1e-09 65.1 48 62.5
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 6.7e-09 64.7 46 67.4
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 6.7e-09 64.7 48 62.5
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 6.7e-09 64.7 45 66.7
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 6.7e-09 64.7 43 69.8
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 8.7e-09 64.3 42 66.7
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 8.7e-09 64.3 42 66.7
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 8.7e-09 64.3 48 64.6
PGR083G0560 Punica granatum HOM05D000135 ORTHO05D000816 8.7e-09 64.3 44 63.6
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 1.1e-08 63.9 48 62.5
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 1.1e-08 63.9 42 69.0
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.1e-08 63.9 53 60.4
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 1.1e-08 63.9 45 64.4
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 1.1e-08 63.9 49 57.1
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 1.5e-08 63.5 47 59.6
Lsat_1_v5_gn_4_185301 Lactuca sativa HOM05D000135 ORTHO05D000816 1.5e-08 63.5 48 60.4
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.5e-08 63.5 48 62.5
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.9e-08 63.2 52 59.6
Hma1.2p1_1219F.1_g267970 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.9e-08 63.2 45 66.7
Hma1.2p1_2105F.1_g314145 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.9e-08 63.2 45 66.7
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 1.9e-08 63.2 46 58.7
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 1.9e-08 63.2 46 58.7
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.5e-08 62.8 45 62.2
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 3.3e-08 62.4 43 62.8
DCAR_009849 Daucus carota HOM05D000135 ORTHO05D000816 3.3e-08 62.4 42 64.3
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 3.3e-08 62.4 43 60.5
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.3e-08 62.4 45 64.4
HanXRQChr15g0486921 Helianthus annuus HOM05D000135 ORTHO05D000816 3.3e-08 62.4 48 58.3
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 3.3e-08 62.4 44 63.6
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 4.3e-08 62.0 44 59.1
ECA232G4862 Erigeron canadensis HOM05D000135 ORTHO05D000816 4.3e-08 62.0 45 66.7
Nn4g22363 Nelumbo nucifera HOM05D000135 ORTHO05D000816 4.3e-08 62.0 45 62.2
Nn4g22368 Nelumbo nucifera HOM05D000135 ORTHO05D000816 4.3e-08 62.0 45 62.2
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 4.3e-08 62.0 38 71.1
QL03p054162 Quercus lobata HOM05D000135 ORTHO05D000816 4.3e-08 62.0 42 66.7
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 7.4e-08 61.2 45 64.4
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 7.4e-08 61.2 44 56.8
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 7.4e-08 61.2 44 56.8
Oeu011957.1 Olea europaea HOM05D000135 ORTHO05D000816 7.4e-08 61.2 50 62.0
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 7.4e-08 61.2 45 64.4
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 7.4e-08 61.2 42 61.9
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 7.4e-08 61.2 48 58.3
VMungo0464G1988 Vigna mungo HOM05D000135 ORTHO05D000816 7.4e-08 61.2 45 62.2
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 9.6e-08 60.8 51 49.0
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 9.6e-08 60.8 43 67.4
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 9.6e-08 60.8 47 57.4
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 1.3e-07 60.5 43 62.8
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.3e-07 60.5 43 62.8
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.3e-07 60.5 43 62.8
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.3e-07 60.5 43 62.8
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.3e-07 60.5 43 62.8
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.3e-07 60.5 42 59.5
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.3e-07 60.5 48 54.2
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.3e-07 60.5 44 54.5
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 1.3e-07 60.5 48 54.2
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 1.3e-07 60.5 44 54.5
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 1.3e-07 60.5 44 54.5
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.3e-07 60.5 48 54.2
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.6e-07 60.1 42 64.3
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 54.5
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 54.5
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 54.5
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 54.5
CANSAT25G2687 Cannabis sativa HOM05D000135 ORTHO05D000816 2.1e-07 59.7 45 62.2
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 2.1e-07 59.7 45 57.8
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 2.1e-07 59.7 45 60.0
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 2.1e-07 59.7 48 52.1
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 44 54.5
vmacro05944 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 2.1e-07 59.7 46 60.9
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.8e-07 59.3 42 59.5
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.8e-07 59.3 42 59.5
Oeu019048.1 Olea europaea HOM05D000135 ORTHO05D000816 2.8e-07 59.3 37 67.6
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 2.8e-07 59.3 43 60.5
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 3.7e-07 58.9 44 54.5
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 3.7e-07 58.9 43 58.1
QL03p054203 Quercus lobata HOM05D000135 ORTHO05D000816 3.7e-07 58.9 42 64.3
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.7e-07 58.9 43 60.5
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 4.8e-07 58.5 48 60.4
CAN.G473.85 Capsicum annuum HOM05D000135 ORTHO05D000816 4.8e-07 58.5 51 62.7
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 4.8e-07 58.5 44 59.1
Lsat_1_v5_gn_9_1180 Lactuca sativa HOM05D000135 ORTHO05D000816 4.8e-07 58.5 46 56.5
Oeu019047.1 Olea europaea HOM05D000135 ORTHO05D000816 4.8e-07 58.5 37 64.9
Peaxi162Scf00420g00047 Petunia axillaris HOM05D000135 ORTHO05D000816 4.8e-07 58.5 47 59.6
Phvul.004G055200 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 4.8e-07 58.5 45 60.0
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 4.8e-07 58.5 42 59.5
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 4.8e-07 58.5 45 60.0
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.2e-07 58.2 42 57.1
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 6.2e-07 58.2 43 65.1
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 6.2e-07 58.2 43 55.8
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 8.1e-07 57.8 45 60.0
Sopen02g038650 Solanum pennellii HOM05D000135 ORTHO05D000816 8.1e-07 57.8 44 61.4
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 8.1e-07 57.8 44 52.3
Lalb_Chr22g0360481 Lupinus albus HOM05D000135 ORTHO05D000816 1.1e-06 57.4 45 60.0
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.1e-06 57.4 44 56.8
MBI02_g10682_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.1e-06 57.4 44 56.8
Solyc02g094000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.1e-06 57.4 51 60.8
PGSC0003DMG400020261 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.1e-06 57.4 51 60.8
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.4e-06 57.0 49 55.1
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.4e-06 57.0 53 50.9
Eucgr.B00128 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.4e-06 57.0 45 60.0
HanXRQChr15g0474941 Helianthus annuus HOM05D000135 ORTHO05D000816 1.4e-06 57.0 48 54.2
Nitab4.5_0007150g0060 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.4e-06 57.0 52 57.7
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 1.4e-06 57.0 49 55.1
GSVIVG01010383001 Vitis vinifera HOM05D000135 ORTHO05D000816 1.4e-06 57.0 44 54.5
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.8e-06 56.6 42 59.5
Aqoxy5G00935 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 2.4e-06 56.2 45 57.8
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 2.4e-06 56.2 44 56.8
Nn3g16507 Nelumbo nucifera HOM05D000135 ORTHO05D000816 3.1e-06 55.8 45 55.6
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 3.1e-06 55.8 49 53.1
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 3.1e-06 55.8 49 53.1
GSVIVG01010378001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.1e-06 55.8 44 54.5
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 4.0e-06 55.5 42 61.9
HanXRQChr09g0256101 Helianthus annuus HOM05D000135 ORTHO05D000816 4.0e-06 55.5 45 55.6
Oeu058772.1 Olea europaea HOM05D000135 ORTHO05D000816 4.0e-06 55.5 50 56.0
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.0e-06 55.5 44 52.3
PGSC0003DMG400013427 Solanum tuberosum HOM05D000135 ORTHO05D000816 5.3e-06 55.1 42 69.0
PSO170G5225 Papaver somniferum HOM05D031213 ORTHO05D000816 6.9e-06 54.7 41 61.0
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 9.0e-06 54.3 41 58.5
MBI01_g44779_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 9.0e-06 54.3 44 54.5
PSO017G1231 Papaver somniferum HOM05D000135 ORTHO05D000816 9.0e-06 54.3 41 58.5


User provided reference genes

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