Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 1.5e-98 362.8 188 100.0
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.6e-42 176.8 190 53.2
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.7e-41 173.3 178 55.6
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 1.7e-41 173.3 187 56.7
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 2.3e-41 172.9 188 55.3
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.9e-40 169.9 168 53.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 3.3e-40 169.1 184 56.5
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 6.2e-39 164.9 174 55.7
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 8.1e-39 164.5 187 51.9
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 1.4e-38 163.7 192 49.0
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 5.2e-38 161.8 187 52.4
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 8.9e-38 161.0 180 52.8
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 8.9e-38 161.0 184 54.9
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.2e-37 160.6 186 50.5
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.2e-37 160.6 187 52.4
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.5e-37 160.2 168 50.0
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.3e-36 157.1 188 52.1
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.3e-36 157.1 185 49.7
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 2.4e-35 152.9 168 48.8
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 4.1e-35 152.1 181 50.3
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 5.4e-35 151.8 169 50.3
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 7.1e-35 151.4 196 49.0
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 9.2e-35 151.0 170 50.0
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.6e-34 150.2 180 47.2
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.6e-34 150.2 176 52.3
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 2.7e-34 149.4 169 49.7
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 4.6e-34 148.7 166 51.2
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 7.8e-34 147.9 180 50.6
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.0e-33 147.5 182 47.8
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.0e-33 146.0 184 47.8
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 3.0e-33 146.0 169 48.5
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 3.0e-33 146.0 174 49.4
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 3.9e-33 145.6 173 50.3
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.9e-33 145.6 160 51.2
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.5e-32 143.7 162 51.2
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.9e-32 143.3 179 46.9
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 9.5e-32 141.0 188 48.9
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 1.2e-31 140.6 190 47.4
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.6e-31 140.2 187 44.4
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.6e-31 140.2 187 44.4
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 2.1e-31 139.8 166 47.0
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 3.6e-31 139.0 184 43.5
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 3.6e-31 139.0 186 46.2
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 4.7e-31 138.7 205 44.9
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 6.2e-31 138.3 179 49.7
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 6.2e-31 138.3 178 45.5
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 8.1e-31 137.9 163 48.5
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 1.1e-30 137.5 177 45.2
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 2.4e-30 136.3 173 45.1
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.1e-30 136.0 183 44.3
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 4.0e-30 135.6 177 44.6
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 5.2e-30 135.2 153 49.0
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.2e-30 135.2 182 44.5
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 8.9e-30 134.4 164 44.5
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 8.9e-30 134.4 191 46.1
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-29 134.0 187 47.6
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.2e-29 134.0 165 46.1
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 1.5e-29 133.7 213 42.7
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 3.4e-29 132.5 198 42.4
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.4e-29 132.1 179 45.3
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 7.6e-29 131.3 217 41.5
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 7.6e-29 131.3 218 41.3
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.3e-28 130.6 198 42.9
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.9e-28 128.6 183 47.5
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.1e-27 127.5 169 49.1
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.4e-27 127.1 160 46.9
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.9e-27 126.7 164 47.0
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.9e-27 126.7 148 48.0
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 2.4e-27 126.3 180 45.0
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 5.4e-27 125.2 186 41.9
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 5.4e-27 125.2 157 48.4
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 5.4e-27 125.2 157 48.4
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 5.4e-27 125.2 153 45.8
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.6e-26 123.6 177 42.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.1e-26 123.2 210 36.7
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 2.1e-26 123.2 169 40.2
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.7e-26 122.9 155 47.1
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 2.7e-26 122.9 194 40.2
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 3.5e-26 122.5 167 45.5
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 3.5e-26 122.5 167 45.5
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 3.5e-26 122.5 187 44.9
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 4.6e-26 122.1 153 47.7
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 4.6e-26 122.1 161 46.0
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 4.6e-26 122.1 168 45.2
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 6.0e-26 121.7 167 40.7
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 7.8e-26 121.3 187 43.3
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.0e-25 120.9 167 44.9
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-25 120.2 169 45.0
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 5.1e-25 118.6 163 43.6
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 8.6e-25 117.9 161 41.6
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.5e-24 117.1 178 40.4
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.9e-24 116.7 187 39.6
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.9e-24 116.7 188 41.5
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 3.3e-24 115.9 185 38.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 3.3e-24 115.9 171 41.5
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 4.3e-24 115.5 176 39.2
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 4.3e-24 115.5 174 43.7
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 7.3e-24 114.8 178 41.6
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 9.6e-24 114.4 190 35.8
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.6e-23 113.6 185 40.0
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 2.1e-23 113.2 159 43.4
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.1e-22 109.4 164 43.3
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 5.2e-22 108.6 218 38.1
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 6.9e-22 108.2 189 37.6
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 1.5e-21 107.1 163 39.3
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 1.5e-21 107.1 163 39.9
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.6e-21 106.3 164 43.9
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 3.4e-21 105.9 185 37.3
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 7.6e-21 104.8 83 62.7
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.3e-20 104.0 165 44.2
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 6.4e-20 101.7 152 42.8
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.4e-19 99.8 236 32.6
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 4.2e-19 99.0 146 42.5
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 7.1e-19 98.2 177 36.7
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 9.3e-19 97.8 226 35.4
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.1e-18 96.7 217 35.5
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 6.0e-18 95.1 162 37.0
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 1.0e-17 94.4 137 39.4
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 3.3e-16 89.4 164 41.5
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 4.3e-16 89.0 95 47.4
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 7.3e-16 88.2 122 45.1
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-15 86.7 69 62.3
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.1e-15 86.7 69 62.3
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 6.9e-14 81.6 111 49.5
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 6.9e-14 81.6 144 36.8
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.5e-13 80.5 88 46.6
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.3e-12 77.4 174 33.9
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 2.9e-12 76.3 150 37.3
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 4.9e-12 75.5 139 35.3
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.9e-12 75.5 175 33.7
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.9e-11 73.6 170 30.0
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 3.9e-09 65.9 165 32.7
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 5.1e-09 65.5 144 30.6
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 2.8e-07 59.7 143 27.3
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 3.7e-07 59.3 52 55.8
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 3.1e-06 56.2 29 82.8
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 3.1e-06 56.2 29 82.8
CDE06G1771 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 4.0e-06 55.8 38 63.2
SEGI_22807 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 6.9e-06 55.1 141 27.0
CDE04G0766 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 9.0e-06 54.7 31 67.7


User provided reference genes

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