Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41C31G4 Lonicera japonica HOM05D000938 ORTHO05D003373 1.4e-81 306.2 154 100.0
Lju41C30G11 Lonicera japonica HOM05D000938 ORTHO05D003373 2.9e-63 245.4 153 83.7
Lju41A31T31 Lonicera japonica HOM05D000938 ORTHO05D003373 8.9e-44 180.6 152 65.1
Lju41A31T32 Lonicera japonica HOM05D000938 ORTHO05D003373 2.7e-32 142.5 152 54.6
Dinv35026 Davidia involucrata HOM05D000938 ORTHO05D003373 1.5e-27 126.7 149 46.3
Actinidia11365 Actinidia chinensis HOM05D000938 ORTHO05D003373 4.6e-24 115.2 146 41.8
Solyc02g067660.4 Solanum lycopersicum HOM05D000938 ORTHO05D003373 3.9e-23 112.1 153 43.1
QL02p078133 Quercus lobata HOM05D000938 ORTHO05D003373 1.9e-22 109.8 148 41.2
QL93p0205_0187 Quercus lobata HOM05D000938 ORTHO05D003373 1.9e-22 109.8 148 41.2
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.3e-22 109.0 153 41.2
Nitab4.5_0005797g0040 Nicotiana tabacum HOM05D000938 ORTHO05D003373 4.3e-22 108.6 148 43.9
Sopen02g016770 Solanum pennellii HOM05D000938 ORTHO05D003373 4.3e-22 108.6 153 41.8
CAN.G1649.3 Capsicum annuum HOM05D000938 ORTHO05D003373 5.6e-22 108.2 153 41.2
HanXRQChr09g0265851 Helianthus annuus HOM05D000938 ORTHO05D003373 5.6e-22 108.2 148 41.2
PGSC0003DMG400006945 Solanum tuberosum HOM05D000938 ORTHO05D003373 1.3e-21 107.1 153 42.5
Nitab4.5_0011847g0010 Nicotiana tabacum HOM05D000938 ORTHO05D003373 2.1e-21 106.3 148 42.6
Potri.019G005256 Populus trichocarpa HOM05D000938 ORTHO05D003373 2.1e-21 106.3 151 43.7
Peaxi162Scf00195g00127 Petunia axillaris HOM05D000938 ORTHO05D003373 8.1e-21 104.4 144 41.7
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 8.1e-21 104.4 152 38.8
Cc07_g02580 Coffea canephora HOM05D000938 ORTHO05D003373 1.1e-20 104.0 137 43.8
Nitab4.5_0001727g0040 Nicotiana tabacum HOM05D000938 ORTHO05D003373 1.1e-20 104.0 153 40.5
ECA232G0705 Erigeron canadensis HOM05D000938 ORTHO05D003373 1.8e-20 103.2 142 39.4
Duzib264G0890 Durio zibethinus HOM05D000938 ORTHO05D003373 2.4e-20 102.8 145 44.1
Nitab4.5_0023218g0010 Nicotiana tabacum HOM05D000938 ORTHO05D003373 2.4e-20 102.8 153 39.9
Oeu029382.1 Olea europaea HOM05D000938 ORTHO05D003373 4.0e-20 102.1 151 40.4
TAR629G3034 Trochodendron aralioides HOM05D000938 ORTHO05D003373 4.4e-19 98.6 151 43.0
Rhsim10G0027700 Rhododendron simsii HOM05D000938 ORTHO05D003373 5.8e-19 98.2 149 38.9
Rhsim10G0029000 Rhododendron simsii HOM05D000938 ORTHO05D003373 5.8e-19 98.2 149 38.9
HanXRQChr09g0274851 Helianthus annuus HOM05D000938 ORTHO05D003373 9.9e-19 97.4 145 37.9
Peaxi162Scf00368g00121 Petunia axillaris HOM05D000938 ORTHO05D003373 1.3e-18 97.1 153 38.6
TWI36G0225 Tripterygium wilfordii HOM05D000938 ORTHO05D003373 1.3e-18 97.1 143 41.3
ECA232G1211 Erigeron canadensis HOM05D000938 ORTHO05D003373 1.7e-18 96.7 141 37.6
TAR629G1733 Trochodendron aralioides HOM05D000938 ORTHO05D003373 1.7e-18 96.7 152 42.1
Sopen02g018550 Solanum pennellii HOM05D000938 ORTHO05D003373 2.2e-18 96.3 148 39.9
Lsat_1_v5_gn_4_181061 Lactuca sativa HOM05D000938 ORTHO05D003373 3.8e-18 95.5 149 36.2
DCAR_006078 Daucus carota HOM05D000938 ORTHO05D003373 6.4e-18 94.7 146 39.7
Lsat_1_v5_gn_4_180981 Lactuca sativa HOM05D000938 ORTHO05D003373 6.4e-18 94.7 145 37.2
PGSC0003DMG400021206 Solanum tuberosum HOM05D000938 ORTHO05D003373 6.4e-18 94.7 148 40.5
Lsat_1_v5_gn_4_180961 Lactuca sativa HOM05D000938 ORTHO05D003373 8.4e-18 94.4 137 36.5
Atru.chr8.2419 Acer truncatum HOM05D000938 ORTHO05D003373 1.1e-17 94.0 142 42.3
DCAR_006077 Daucus carota HOM05D000938 ORTHO05D003373 1.4e-17 93.6 126 41.3
Solyc02g069400.3 Solanum lycopersicum HOM05D000938 ORTHO05D003373 1.4e-17 93.6 148 39.2
Manes.17G118200 Manihot esculenta HOM05D000938 ORTHO05D003373 1.9e-17 93.2 145 40.0
QL93p0205_0194 Quercus lobata HOM05D000938 ORTHO05D003373 5.4e-17 91.7 148 38.5
GSVIVG01035085001 Vitis vinifera HOM05D000938 ORTHO05D003373 7.1e-17 91.3 151 37.7
QL93p0205_0202 Quercus lobata HOM05D000938 ORTHO05D003373 1.6e-16 90.1 145 37.9
Thecc.04G003800 Theobroma cacao HOM05D000938 ORTHO05D003373 1.6e-16 90.1 146 41.8
Potri.009G086100 Populus trichocarpa HOM05D000938 ORTHO05D003373 2.1e-16 89.7 146 41.8
GSVIVG01035083001 Vitis vinifera HOM05D000938 ORTHO05D003373 3.5e-16 89.0 147 37.4
Cpa.g.sc14.87 Carica papaya HOM05D000938 ORTHO05D003373 4.6e-16 88.6 154 39.0
HanXRQChr03g0089921 Helianthus annuus HOM05D000938 ORTHO05D003373 6.0e-16 88.2 147 37.4
CSS0029236 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D003373 1.0e-15 87.4 121 39.7
Potri.001G290600 Populus trichocarpa HOM05D000938 ORTHO05D003373 1.7e-15 86.7 146 38.4
TPR.G35838 Trifolium pratense HOM05D000938 ORTHO05D003373 1.7e-15 86.7 148 37.8
vmacro05793 Vaccinium macrocarpon HOM05D000938 ORTHO05D003373 1.7e-15 86.7 129 40.3
Ciclev10011372m.g Citrus clementina HOM05D000938 ORTHO05D003373 3.0e-15 85.9 140 40.7
GSVIVG01035081001 Vitis vinifera HOM05D000938 ORTHO05D003373 5.1e-15 85.1 147 37.4
MD09G1039800 Malus domestica HOM05D000938 ORTHO05D003373 6.6e-15 84.7 151 40.4
Prupe.3G279300 Prunus persica HOM05D000938 ORTHO05D003373 8.7e-15 84.3 148 35.8
GSVIVG01032530001 Vitis vinifera HOM05D000938 ORTHO05D003373 8.7e-15 84.3 149 40.3
CiPaw.03G034900 Carya illinoinensis HOM05D000938 ORTHO05D003373 1.1e-14 84.0 148 38.5
GSVIVG01032535001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.1e-14 84.0 149 40.3
QL02p077924 Quercus lobata HOM05D000938 ORTHO05D003373 1.5e-14 83.6 149 40.3
Prupe.2G019500 Prunus persica HOM05D000938 ORTHO05D003373 1.9e-14 83.2 150 40.7
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 2.5e-14 82.8 147 37.4
Eucgr.I01837 Eucalyptus grandis HOM05D000938 ORTHO05D003373 3.3e-14 82.4 149 32.9
Ca_15057_v3 Cicer arietinum L. HOM05D000938 ORTHO05D003373 4.3e-14 82.0 132 38.6
Gorai.001G259500 Gossypium raimondii HOM05D000938 ORTHO05D003373 4.3e-14 82.0 146 37.0
TPR.G35844 Trifolium pratense HOM05D000938 ORTHO05D003373 4.3e-14 82.0 150 38.7
Lsat_1_v5_gn_4_180921 Lactuca sativa HOM05D000938 ORTHO05D003373 5.6e-14 81.6 145 33.8
Lj2g0012835 Lotus japonicus HOM05D000938 ORTHO05D003373 5.6e-14 81.6 150 39.3
MD09G1039000 Malus domestica HOM05D000938 ORTHO05D003373 5.6e-14 81.6 151 41.7
Gohir.A07G218000 Gossypium hirsutum HOM05D000938 ORTHO05D003373 7.3e-14 81.3 146 37.0
Lj2g0002792 Lotus japonicus HOM05D000938 ORTHO05D003373 7.3e-14 81.3 152 38.2
RcHm_v2.0_Chr2g0170411 Rosa chinensis HOM05D000938 ORTHO05D003373 7.3e-14 81.3 150 38.0
ECA232G0762 Erigeron canadensis HOM05D000938 ORTHO05D003373 9.6e-14 80.9 148 32.4
Gohir.D07G225100 Gossypium hirsutum HOM05D000938 ORTHO05D003373 1.3e-13 80.5 146 36.3
MD09G1038700 Malus domestica HOM05D000938 ORTHO05D003373 1.6e-13 80.1 151 40.4
Psat1g079960 Pisum sativum HOM05D000938 ORTHO05D003373 1.6e-13 80.1 128 37.5
QL02p078120 Quercus lobata HOM05D000030 ORTHO05D000009 1.6e-13 80.1 135 38.5
Eucgr.I01840 Eucalyptus grandis HOM05D000938 ORTHO05D003373 2.1e-13 79.7 151 32.5
Potri.019G007227 Populus trichocarpa HOM05D000938 ORTHO05D003373 2.1e-13 79.7 150 37.3
MD17G1039700 Malus domestica HOM05D000938 ORTHO05D003373 6.2e-13 78.2 153 37.9
Psat1g079240 Pisum sativum HOM05D000938 ORTHO05D003373 6.2e-13 78.2 128 36.7
Prupe.3G279000 Prunus persica HOM05D000938 ORTHO05D003373 6.2e-13 78.2 144 37.5
Medtr3g467350 Medicago truncatula HOM05D000938 ORTHO05D003373 8.1e-13 77.8 147 38.8
Lj2g0024933 Lotus japonicus HOM05D000938 ORTHO05D003373 1.1e-12 77.4 123 40.7
Glyma.13G069800 Glycine max HOM05D000938 ORTHO05D003373 1.4e-12 77.0 156 38.5
MD09G1038500 Malus domestica HOM05D000938 ORTHO05D003373 1.4e-12 77.0 151 39.1
Haze_14641 Corylus avellana HOM05D000938 ORTHO05D003373 1.8e-12 76.6 150 38.7
MD09G1039700 Malus domestica HOM05D000938 ORTHO05D003373 2.4e-12 76.3 151 38.4
Medtr3g467360 Medicago truncatula HOM05D000938 ORTHO05D003373 2.4e-12 76.3 137 38.7
Haze_19126 Corylus avellana HOM05D000938 ORTHO05D003373 3.1e-12 75.9 134 42.5
PGR142G3586 Punica granatum HOM05D000938 ORTHO05D003373 3.1e-12 75.9 145 33.1
FAN14G0689 Fragaria x ananassa HOM05D000938 ORTHO05D003373 4.0e-12 75.5 151 35.8
Medtr6g007975 Medicago truncatula HOM05D000938 ORTHO05D003373 4.0e-12 75.5 126 39.7
RcHm_v2.0_Chr7g0219521 Rosa chinensis HOM05D000938 ORTHO05D003373 4.0e-12 75.5 151 38.4
arahy.Tifrunner.gnm1.ann1.4FF1BV Arachis hypogaea HOM05D000938 ORTHO05D003373 5.3e-12 75.1 153 35.3
arahy.Tifrunner.gnm1.ann1.7BF3PT Arachis hypogaea HOM05D000938 ORTHO05D003373 5.3e-12 75.1 153 35.3
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 5.3e-12 75.1 151 35.8
Medtr6g007980 Medicago truncatula HOM05D000938 ORTHO05D003373 6.9e-12 74.7 127 38.6
RcHm_v2.0_Chr7g0219541 Rosa chinensis HOM05D000938 ORTHO05D003373 6.9e-12 74.7 150 36.7
FvH4_6g50160 Fragaria vesca HOM05D000938 ORTHO05D003373 9.0e-12 74.3 151 35.8
PGR142G3985 Punica granatum HOM05D000938 ORTHO05D003373 1.2e-11 73.9 144 31.9
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.0e-11 73.2 150 34.7
Medtr6g007985 Medicago truncatula HOM05D000938 ORTHO05D003373 2.0e-11 73.2 132 37.1
Medtr6g008015 Medicago truncatula HOM05D000938 ORTHO05D003373 2.0e-11 73.2 132 37.1
Phvul.004G020000 Phaseolus vulgaris HOM05D000938 ORTHO05D003373 2.0e-11 73.2 149 34.2
MD17G1039800 Malus domestica HOM05D000938 ORTHO05D003373 2.6e-11 72.8 156 37.2
RcHm_v2.0_Chr2g0170561 Rosa chinensis HOM05D000938 ORTHO05D003373 2.6e-11 72.8 150 34.7
FvH4_6g50162 Fragaria vesca HOM05D000938 ORTHO05D003373 3.4e-11 72.4 150 34.7
FAN05G0442 Fragaria x ananassa HOM05D000938 ORTHO05D003373 3.4e-11 72.4 151 36.4
PGR142G0819 Punica granatum HOM05D000938 ORTHO05D003373 3.4e-11 72.4 150 28.7
QL02p078107 Quercus lobata HOM05D000938 ORTHO05D003373 3.4e-11 72.4 151 34.4
QL02p078026 Quercus lobata HOM05D000938 ORTHO05D003373 5.8e-11 71.6 140 33.6
Lalb_Chr21g0319301 Lupinus albus HOM05D000938 ORTHO05D003373 7.6e-11 71.2 155 34.2
Eucgr.I01866 Eucalyptus grandis HOM05D000938 ORTHO05D003373 9.9e-11 70.9 125 36.0
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 9.9e-11 70.9 152 36.2
QL04p034975 Quercus lobata HOM05D000938 ORTHO05D003373 9.9e-11 70.9 149 35.6
TPR.G31470 Trifolium pratense HOM05D000938 ORTHO05D003373 9.9e-11 70.9 151 34.4
DCAR_013976 Daucus carota HOM05D000938 ORTHO05D003373 1.7e-10 70.1 141 36.2
CAN.G675.11 Capsicum annuum HOM05D000938 ORTHO05D000001 3.8e-10 68.9 104 37.5
MD17G1039600 Malus domestica HOM05D000938 ORTHO05D003373 3.8e-10 68.9 151 38.4
VMungo0464G1558 Vigna mungo HOM05D000938 ORTHO05D003373 3.8e-10 68.9 153 33.3
Lj1g0017446 Lotus japonicus HOM05D000938 ORTHO05D003373 6.4e-10 68.2 146 36.3
Nn3g16989 Nelumbo nucifera HOM05D000938 ORTHO05D003373 6.4e-10 68.2 149 33.6
VMungo0464G1973 Vigna mungo HOM05D000938 ORTHO05D003373 6.4e-10 68.2 156 33.3
Glyma.19G013200 Glycine max HOM05D000938 ORTHO05D003373 8.4e-10 67.8 152 34.9
GSVIVG01032531001 Vitis vinifera HOM05D000938 ORTHO05D003373 8.4e-10 67.8 137 37.2
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.1e-09 67.4 151 37.1
PGSC0003DMG400039376 Solanum tuberosum HOM05D000938 ORTHO05D003373 1.4e-09 67.0 72 44.4
Sed0024325 Sechium edule HOM05D000938 ORTHO05D003373 4.2e-09 65.5 128 37.5
Medtr6g008055 Medicago truncatula HOM05D000938 ORTHO05D003373 5.5e-09 65.1 132 35.6
Glyma.13G069000 Glycine max HOM05D000938 ORTHO05D003373 7.1e-09 64.7 152 34.2
RcHm_v2.0_Chr6g0283981 Rosa chinensis HOM05D000938 ORTHO05D003373 1.2e-08 63.9 148 35.8
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.7e-08 62.8 149 34.9
ATR1149G066 Amborella trichopoda HOM05D000938 ORTHO05D003373 7.9e-08 61.2 144 38.2
MELO3C009925.2 Cucumis melo HOM05D000938 ORTHO05D003373 1.3e-07 60.5 121 35.5
Nn3g16990 Nelumbo nucifera HOM05D000938 ORTHO05D003373 1.8e-07 60.1 152 37.5
TPR.G31458 Trifolium pratense HOM05D000938 ORTHO05D003373 1.8e-07 60.1 141 33.3
Cfa009717 Carpinus fangiana HOM05D000938 ORTHO05D003373 5.1e-07 58.5 106 38.7
DCAR_013977 Daucus carota HOM05D000938 ORTHO05D003373 6.7e-07 58.2 104 36.5
Eucgr.I01843 Eucalyptus grandis HOM05D000938 ORTHO05D003373 6.7e-07 58.2 97 35.1
CsaV3_3G042050 Cucumis sativus L. HOM05D000938 ORTHO05D003373 8.7e-07 57.8 119 35.3
TPR.G33057 Trifolium pratense HOM05D000938 ORTHO05D003373 8.7e-07 57.8 103 36.9
Thhalv10013249m.g Eutrema salsugineum HOM05D000938 ORTHO05D003373 4.3e-06 55.5 93 37.6
FAN15G0407 Fragaria x ananassa HOM05D000186 ORTHO05D002329 4.3e-06 55.5 106 34.9
BcaB08g36937 Brassica carinata HOM05D000938 ORTHO05D003373 9.6e-06 54.3 105 34.3
A03p06850 Brassica napus HOM05D000938 ORTHO05D003373 9.6e-06 54.3 112 33.9


User provided reference genes

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