Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41C0G4 Lonicera japonica HOM05D000224 ORTHO05D234974 4.6e-48 194.1 91 100.0
MD17G1061600 Malus domestica HOM05D000224 ORTHO05D001489 1.8e-07 59.3 37 81.1
MSTRG.23877 Avicennia marina HOM05D000224 ORTHO05D001489 2.3e-07 58.9 37 81.1
Gohir.A11G061100 Gossypium hirsutum HOM05D000224 ORTHO05D001489 2.3e-07 58.9 37 81.1
Gohir.D11G065200 Gossypium hirsutum HOM05D000224 ORTHO05D001489 2.3e-07 58.9 37 81.1
Gorai.007G070400 Gossypium raimondii HOM05D000224 ORTHO05D001489 2.3e-07 58.9 37 81.1
SalBow1G3289 Salvia bowleyana HOM05D000224 ORTHO05D001489 2.3e-07 58.9 37 81.1
SalBow1G7359 Salvia bowleyana HOM05D000224 ORTHO05D001489 2.3e-07 58.9 37 81.1
CiPaw.03G087700 Carya illinoinensis HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
CsaV3_4G010260 Cucumis sativus L. HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
Dinv33836 Davidia involucrata HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
MD09G1068600 Malus domestica HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
Manes.01G094500 Manihot esculenta HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
Potri.017G096900 Populus trichocarpa HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
Prupe.3G252200 Prunus persica HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
Sabra17G0084300 Salix brachista HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
SabraUnG0002100 Salix brachista HOM05D000224 ORTHO05D001489 3.0e-07 58.5 37 81.1
EL10Ac2g03150 Beta vulgaris HOM05D000224 ORTHO05D001489 3.9e-07 58.2 37 81.1
AUR62018201 Chenopodium quinoa HOM05D000224 ORTHO05D001489 3.9e-07 58.2 37 81.1
Actinidia17592 Actinidia chinensis HOM05D000224 ORTHO05D001489 5.1e-07 57.8 37 78.4
arahy.Tifrunner.gnm1.ann1.EM9KCS Arachis hypogaea HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
arahy.Tifrunner.gnm1.ann1.GJD59M Arachis hypogaea HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
CAN.G497.95 Capsicum annuum HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
FvH4_6g46691 Fragaria vesca HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
FAN02G0917 Fragaria x ananassa HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
FAN05G2440 Fragaria x ananassa HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
FAN14G2826 Fragaria x ananassa HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
Lj1g0016417 Lotus japonicus HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
Manes.02G056300 Manihot esculenta HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
RcHm_v2.0_Chr2g0165571 Rosa chinensis HOM05D000224 ORTHO05D001489 6.7e-07 57.4 38 76.3
Solyc02g089060.3 Solanum lycopersicum HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
Sopen02g033810 Solanum pennellii HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
PGSC0003DMG400001363 Solanum tuberosum HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
TPR.G33415 Trifolium pratense HOM05D000224 ORTHO05D001489 6.7e-07 57.4 37 78.4
Duzib264G0289 Durio zibethinus HOM05D000224 ORTHO05D001489 8.8e-07 57.0 37 78.4
Thecc.04G097600 Theobroma cacao HOM05D000224 ORTHO05D001489 8.8e-07 57.0 37 78.4
TWI34G0475 Tripterygium wilfordii HOM05D000224 ORTHO05D001489 8.8e-07 57.0 37 78.4
Atru.chr8.504 Acer truncatum HOM05D000224 ORTHO05D001489 1.1e-06 56.6 37 75.7
AUR62038688 Chenopodium quinoa HOM05D000224 ORTHO05D001489 1.1e-06 56.6 37 78.4
Migut.H00612 Erythranthe guttata HOM05D000224 ORTHO05D001489 1.1e-06 56.6 37 78.4
Actinidia26256 Actinidia chinensis HOM05D000224 ORTHO05D001489 2.0e-06 55.8 37 78.4
Medtr7g015220 Medicago truncatula HOM05D000224 ORTHO05D001489 2.0e-06 55.8 37 75.7
Potri.004G116500 Populus trichocarpa HOM05D000224 ORTHO05D001489 2.0e-06 55.8 37 75.7
Hund13120 Selenicereus undatus HOM05D000224 ORTHO05D001489 2.0e-06 55.8 37 78.4
MSTRG.2991 Avicennia marina HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 75.7
CSS0043921 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 78.4
CiPaw.04G054400 Carya illinoinensis HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 78.4
Glyma.18G269200 Glycine max HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 75.7
Phvul.008G031400 Phaseolus vulgaris HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 75.7
VMungo1383G0362 Vigna mungo HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 75.7
GSVIVG01032917001 Vitis vinifera HOM05D000224 ORTHO05D001489 2.6e-06 55.5 37 78.4
Cc07_g04340 Coffea canephora HOM05D000224 ORTHO05D001489 3.3e-06 55.1 37 75.7
Eucgr.J01386 Eucalyptus grandis HOM05D000224 ORTHO05D001489 3.3e-06 55.1 37 75.7
Glyma.08G247700 Glycine max HOM05D000224 ORTHO05D001489 3.3e-06 55.1 37 75.7
Lj4A120T25 Lonicera japonica HOM05D000224 ORTHO05D001489 3.3e-06 55.1 37 75.7
SGA_v2.0_scaffold52G19124 Striga asiatica HOM05D000224 ORTHO05D001489 3.3e-06 55.1 38 73.7
BcaC06g30857 Brassica carinata HOM05D000224 ORTHO05D001489 4.4e-06 54.7 37 73.0
C07p38300 Brassica napus HOM05D000224 ORTHO05D001489 4.4e-06 54.7 37 70.3
Ca_26853_v3 Cicer arietinum L. HOM05D000224 ORTHO05D001489 4.4e-06 54.7 37 73.0
Lalb_Chr10g0092811 Lupinus albus HOM05D000224 ORTHO05D001489 4.4e-06 54.7 37 73.0
Rhsim08G0075600 Rhododendron simsii HOM05D000224 ORTHO05D001489 4.4e-06 54.7 37 75.7
Sp2g18050 Schrenkiella parvula HOM05D000224 ORTHO05D001489 4.4e-06 54.7 37 73.0
Ah.10g032340 Amaranthus hybridus HOM05D000224 ORTHO05D001489 5.7e-06 54.3 37 73.0
BcaC06g33700 Brassica carinata HOM05D000224 ORTHO05D001489 5.7e-06 54.3 37 70.3
A06p39830 Brassica napus HOM05D000224 ORTHO05D001489 5.7e-06 54.3 37 70.3
BolC7t44356H Brassica oleracea HOM05D000224 ORTHO05D001489 5.7e-06 54.3 37 70.3
BraA06t26897Z Brassica rapa HOM05D000224 ORTHO05D001489 5.7e-06 54.3 37 70.3
Sabra04G0070100 Salix brachista HOM05D000224 ORTHO05D001489 5.7e-06 54.3 37 75.7
Ciclev10011905m.g Citrus clementina HOM05D000224 ORTHO05D001489 7.4e-06 53.9 39 71.8
Duzib147G0816 Durio zibethinus HOM05D000224 ORTHO05D001489 7.4e-06 53.9 37 75.7
Sc14g0006390 Simmondsia chinensis HOM05D000224 ORTHO05D001489 7.4e-06 53.9 38 71.1
TWI32G0374 Tripterygium wilfordii HOM05D000224 ORTHO05D001489 7.4e-06 53.9 37 73.0
AL5G20150 Arabidopsis lyrata HOM05D000224 ORTHO05D001489 9.7e-06 53.5 37 70.3
ClCG11G004830 Citrullus lanatus HOM05D000224 ORTHO05D001489 9.7e-06 53.5 37 73.0
Nitab4.5_0005596g0060 Nicotiana tabacum HOM05D000224 ORTHO05D001489 9.7e-06 53.5 38 71.1
Sed0003452 Sechium edule HOM05D000224 ORTHO05D001489 9.7e-06 53.5 37 73.0
TAR622G1062 Trochodendron aralioides HOM05D000224 ORTHO05D001489 9.7e-06 53.5 37 73.0
TAR629G2720 Trochodendron aralioides HOM05D000224 ORTHO05D001489 9.7e-06 53.5 37 70.3


User provided reference genes

Program Settings