Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41A47T19 Lonicera japonica HOM05D003882 ORTHO05D004598 2.1e-31 138.3 65 100.0
Hund20055 Selenicereus undatus HOM05D003882 ORTHO05D004598 4.9e-20 100.5 53 83.0
GSVIVG01001845001 Vitis vinifera HOM05D003882 ORTHO05D004598 2.7e-18 94.7 54 77.8
Dinv41146 Davidia involucrata HOM05D003882 ORTHO05D004598 7.9e-18 93.2 49 87.8
Lsat_1_v5_gn_0_8180 Lactuca sativa HOM05D003882 ORTHO05D004598 7.9e-18 93.2 54 74.1
Sc14g0001460 Simmondsia chinensis HOM05D003882 ORTHO05D004598 1.0e-17 92.8 54 74.1
BraA01t03571Z Brassica rapa HOM05D003882 ORTHO05D004598 1.3e-17 92.4 54 79.6
Haze_14818 Corylus avellana HOM05D003882 ORTHO05D004598 2.3e-17 91.7 54 79.6
Duzib264G0449 Durio zibethinus HOM05D003882 ORTHO05D004598 2.3e-17 91.7 54 79.6
Gohir.D09G033800 Gossypium hirsutum HOM05D003882 ORTHO05D004598 2.3e-17 91.7 54 79.6
BcaC09g48941 Brassica carinata HOM05D003882 ORTHO05D004598 3.0e-17 91.3 54 77.8
A01p34890 Brassica napus HOM05D003882 ORTHO05D004598 3.0e-17 91.3 54 77.8
C01p44280 Brassica napus HOM05D003882 ORTHO05D004598 3.0e-17 91.3 54 77.8
BolC1t04394H Brassica oleracea HOM05D003882 ORTHO05D004598 3.0e-17 91.3 54 77.8
HanXRQChr15g0470031 Helianthus annuus HOM05D003882 ORTHO05D004598 3.0e-17 91.3 54 72.2
MBI17_g07068_MAGBIO Magnolia biondii HOM05D003882 ORTHO05D004598 3.0e-17 91.3 54 77.8
Aqoxy6G00237 Aquilegia oxysepala HOM05D003882 ORTHO05D004598 3.9e-17 90.9 54 77.8
Cfa007272 Carpinus fangiana HOM05D003882 ORTHO05D004598 3.9e-17 90.9 54 79.6
Duzib177G1128 Durio zibethinus HOM05D003882 ORTHO05D004598 3.9e-17 90.9 54 79.6
HanXRQChr11g0321651 Helianthus annuus HOM05D003882 ORTHO05D004598 3.9e-17 90.9 54 72.2
Nn3g16559 Nelumbo nucifera HOM05D003882 ORTHO05D004598 3.9e-17 90.9 50 82.0
Peaxi162Scf00046g02622 Petunia axillaris HOM05D003882 ORTHO05D004598 3.9e-17 90.9 54 79.6
TWI36G1591 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 3.9e-17 90.9 49 81.6
Atru.chr6.2490 Acer truncatum HOM05D003882 ORTHO05D004598 5.1e-17 90.5 54 77.8
Duzib106G0341 Durio zibethinus HOM05D003882 ORTHO05D004598 5.1e-17 90.5 54 77.8
Gohir.A09G033520 Gossypium hirsutum HOM05D003882 ORTHO05D004598 5.1e-17 90.5 49 87.8
Gorai.006G038800 Gossypium raimondii HOM05D003882 ORTHO05D004598 5.1e-17 90.5 49 87.8
TAR371G0752 Trochodendron aralioides HOM05D003882 ORTHO05D004598 5.1e-17 90.5 54 77.8
TAR629G1857 Trochodendron aralioides HOM05D003882 ORTHO05D004598 5.1e-17 90.5 54 77.8
CSS0002062 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D003383 6.7e-17 90.1 54 75.9
Cc00_g01950 Coffea canephora HOM05D003882 ORTHO05D004598 6.7e-17 90.1 54 72.2
Sp3g17870 Schrenkiella parvula HOM05D003882 ORTHO05D004598 6.7e-17 90.1 54 75.9
TWI18G0330 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 6.7e-17 90.1 54 77.8
Actinidia36169 Actinidia chinensis HOM05D003882 ORTHO05D004598 8.7e-17 89.7 56 71.4
BcaC05g28399 Brassica carinata HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
A05p29270 Brassica napus HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
C05p44780 Brassica napus HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
BolC5t33204H Brassica oleracea HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
BraA05t21810Z Brassica rapa HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
CARHR257250 Cardamine hirsuta HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
THA.LOC104802387 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 75.9
Thecc.05G285600 Theobroma cacao HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 77.8
HPP92_019923 Vanilla planifolia HOM05D003882 ORTHO05D004598 8.7e-17 89.7 54 72.2
Actinidia06312 Actinidia chinensis HOM05D003882 ORTHO05D004598 1.1e-16 89.4 55 76.4
CiPaw.03G050800 Carya illinoinensis HOM05D003882 ORTHO05D004598 1.1e-16 89.4 54 75.9
Prupe.1G532900 Prunus persica HOM05D003882 ORTHO05D004598 1.1e-16 89.4 54 74.1
Prupe.3G300400 Prunus persica HOM05D003882 ORTHO05D004598 1.1e-16 89.4 54 74.1
Thecc.04G028000 Theobroma cacao HOM05D003882 ORTHO05D004598 1.1e-16 89.4 50 78.0
CDE02G2967 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 1.5e-16 89.0 47 80.9
Hund27387 Selenicereus undatus HOM05D003882 ORTHO05D004598 1.5e-16 89.0 49 79.6
VMungo0647G1296 Vigna mungo HOM05D003882 ORTHO05D004598 1.5e-16 89.0 54 74.1
Aa31LG11G15090 Aethionema arabicum HOM05D003882 ORTHO05D004598 1.9e-16 88.6 54 74.1
arahy.Tifrunner.gnm1.ann1.2L480B Arachis hypogaea HOM05D003882 ORTHO05D004598 2.5e-16 88.2 49 75.5
arahy.Tifrunner.gnm1.ann1.61M3XX Arachis hypogaea HOM05D003882 ORTHO05D004598 2.5e-16 88.2 49 75.5
AUR62014165 Chenopodium quinoa HOM05D003882 ORTHO05D004598 2.5e-16 88.2 54 70.4
Cc00_g03690 Coffea canephora HOM05D003882 ORTHO05D004598 2.5e-16 88.2 54 70.4
Thhalv10021039m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 2.5e-16 88.2 54 74.1
Phvul.001G035900 Phaseolus vulgaris HOM05D003882 ORTHO05D004598 2.5e-16 88.2 54 74.1
unitig_899.g15455 Utricularia gibba HOM05D003882 ORTHO05D004598 2.5e-16 88.2 47 80.9
AT5G50960 Arabidopsis thaliana HOM05D003882 ORTHO05D004598 3.3e-16 87.8 54 74.1
EL10Ac7g16174 Beta vulgaris HOM05D003882 ORTHO05D004598 3.3e-16 87.8 48 81.2
Carub.0008s1098 Capsella rubella HOM05D003882 ORTHO05D004598 3.3e-16 87.8 54 74.1
CDE09G0216 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 3.3e-16 87.8 47 78.7
AUR62002701 Chenopodium quinoa HOM05D003882 ORTHO05D004598 3.3e-16 87.8 54 72.2
Ciclev10015755m.g Citrus clementina HOM05D003882 ORTHO05D004598 3.3e-16 87.8 54 75.9
Hma1.2p1_0227F.1_g095890 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 4.3e-16 87.4 56 73.2
MD17G1017500 Malus domestica HOM05D003882 ORTHO05D004598 4.3e-16 87.4 54 72.2
MSTRG.24071 Avicennia marina HOM05D003882 ORTHO05D004598 5.7e-16 87.0 54 75.9
MELO3C008983.2 Cucumis melo HOM05D003882 ORTHO05D004598 5.7e-16 87.0 54 75.9
CsaV3_4G031060 Cucumis sativus L. HOM05D003882 ORTHO05D004598 5.7e-16 87.0 54 75.9
Lalb_Chr16g0386401 Lupinus albus HOM05D003882 ORTHO05D004598 5.7e-16 87.0 54 72.2
MD09G1017000 Malus domestica HOM05D003882 ORTHO05D004598 5.7e-16 87.0 54 72.2
CANSAT64G0400 Cannabis sativa HOM05D003882 ORTHO05D004598 7.4e-16 86.7 54 74.1
CAN.G566.35 Capsicum annuum HOM05D003882 ORTHO05D004598 7.4e-16 86.7 49 77.6
Glyma.14G095000 Glycine max HOM05D003882 ORTHO05D004598 7.4e-16 86.7 54 72.2
Glyma.17G228500 Glycine max HOM05D003882 ORTHO05D004598 7.4e-16 86.7 54 72.2
Nitab4.5_0005160g0070 Nicotiana tabacum HOM05D003882 ORTHO05D004598 7.4e-16 86.7 55 72.7
Sed0009517 Sechium edule HOM05D003882 ORTHO05D004598 7.4e-16 86.7 54 74.1
FAN09G0633 Fragaria x ananassa HOM05D003882 ORTHO05D004598 9.6e-16 86.3 54 68.5
Nitab4.5_0001961g0110 Nicotiana tabacum HOM05D003882 ORTHO05D004598 9.6e-16 86.3 55 72.7
PSO017G7334 Papaver somniferum HOM05D003882 ORTHO05D004598 9.6e-16 86.3 47 76.6
PSO541G0693 Papaver somniferum HOM05D003882 ORTHO05D004598 9.6e-16 86.3 47 76.6
PSO675G6248 Papaver somniferum HOM05D003882 ORTHO05D004598 9.6e-16 86.3 47 76.6
Psat6g020160 Pisum sativum HOM05D003882 ORTHO05D004598 9.6e-16 86.3 48 75.0
RcHm_v2.0_Chr2g0174341 Rosa chinensis HOM05D003882 ORTHO05D004598 9.6e-16 86.3 54 70.4
TPR.G21354 Trifolium pratense HOM05D001776 ORTHO05D001771 9.6e-16 86.3 55 70.9
CiPaw.04G033400 Carya illinoinensis HOM05D003882 ORTHO05D004598 1.3e-15 85.9 47 83.0
Lj1g0003723 Lotus japonicus HOM05D003882 ORTHO05D004598 1.3e-15 85.9 54 70.4
Medtr1g016110 Medicago truncatula HOM05D003882 ORTHO05D004598 1.3e-15 85.9 54 70.4
Medtr1g019620 Medicago truncatula HOM05D003882 ORTHO05D004598 1.3e-15 85.9 54 70.4
Solyc12g096690.2 Solanum lycopersicum HOM05D003882 ORTHO05D004598 1.3e-15 85.9 54 72.2
Sopen12g032520 Solanum pennellii HOM05D003882 ORTHO05D004598 1.3e-15 85.9 54 72.2
PGSC0003DMG401029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 1.3e-15 85.9 54 72.2
Potri.001G336900 Populus trichocarpa HOM05D003882 ORTHO05D004598 1.6e-15 85.5 54 72.2
Ca_13161_v3 Cicer arietinum L. HOM05D003882 ORTHO05D004598 2.1e-15 85.1 48 72.9
COL.COLO4_15326 Corchorus olitorius HOM05D003882 ORTHO05D004598 2.1e-15 85.1 49 83.7
MSTRG.3108 Avicennia marina HOM05D003882 ORTHO05D004598 2.8e-15 84.7 47 76.6
TPR.G35387 Trifolium pratense HOM05D001776 ORTHO05D001771 2.8e-15 84.7 49 77.6
Lalb_Chr05g0220891 Lupinus albus HOM05D003882 ORTHO05D004598 3.7e-15 84.3 47 74.5
SalBow8G1058 Salvia bowleyana HOM05D003882 ORTHO05D004598 3.7e-15 84.3 54 72.2
ATR0782G139 Amborella trichopoda HOM05D003882 ORTHO05D004598 6.3e-15 83.6 46 76.1
Migut.H00063 Erythranthe guttata HOM05D003882 ORTHO05D004598 6.3e-15 83.6 47 78.7
Manes.15G156600 Manihot esculenta HOM05D003882 ORTHO05D004598 6.3e-15 83.6 54 72.2
Sed0012212 Sechium edule HOM05D003882 ORTHO05D004598 6.3e-15 83.6 49 79.6
FvH4_6g52730 Fragaria vesca HOM05D003882 ORTHO05D004598 8.2e-15 83.2 54 66.7
FAN14G5526 Fragaria x ananassa HOM05D003882 ORTHO05D004598 8.2e-15 83.2 54 66.7
DCAR_005600 Daucus carota HOM05D003882 ORTHO05D004598 1.1e-14 82.8 53 71.7
SEGI_31184 Sequoiadendron giganteum HOM05D003882 ORTHO05D004598 1.4e-14 82.4 43 79.1
TPR.G13098 Trifolium pratense HOM05D003882 ORTHO05D004598 1.4e-14 82.4 54 68.5
BcaC05g24912 Brassica carinata HOM05D003882 ORTHO05D004598 1.8e-14 82.0 50 74.0
ClCG04G001410 Citrullus lanatus HOM05D003882 ORTHO05D004598 1.8e-14 82.0 54 70.4
QL02p072792 Quercus lobata HOM05D003882 ORTHO05D004598 1.8e-14 82.0 43 83.7
FAN05G0109 Fragaria x ananassa HOM05D003882 ORTHO05D004598 2.4e-14 81.6 54 64.8
THA.LOC104820947 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 3.1e-14 81.3 47 72.3
Mapoly0071s0001 Marchantia polymorpha HOM05D003882 ORTHO05D004598 9.0e-14 79.7 55 67.3
Nitab4.5_0000668g0140 Nicotiana tabacum HOM05D003882 ORTHO05D004598 9.0e-14 79.7 55 67.3
SHI03873 Sapria himalayana HOM05D003882 ORTHO05D004598 1.2e-13 79.3 49 79.6
Eucgr.D01084 Eucalyptus grandis HOM05D003882 ORTHO05D004598 2.6e-13 78.2 54 66.7
QL09p018923 Quercus lobata HOM05D003882 ORTHO05D004598 2.6e-13 78.2 48 72.9
AL2G37760 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 4.5e-13 77.4 60 60.0
PGR142G3649 Punica granatum HOM05D003882 ORTHO05D004598 5.9e-13 77.0 54 63.0
Cre12.g494400 Chlamydomonas reinhardtii HOM05D003882 ORTHO05D004598 7.6e-13 76.6 43 74.4
SMO301G0043 Selaginella moellendorffii HOM05D003882 ORTHO05D004598 7.6e-13 76.6 46 71.7
CBR_g50436 Chara braunii HOM05D003882 ORTHO05D004598 1.0e-12 76.3 49 65.3
Pp3c11_10240 Physcomitrium patens HOM05D003882 ORTHO05D004598 2.2e-12 75.1 53 58.5
Lj1g0002107 Lotus japonicus HOM05D003882 ORTHO05D004598 3.8e-12 74.3 44 75.0
HanXRQChr05g0147771 Helianthus annuus HOM05D003882 ORTHO05D004598 8.4e-12 73.2 51 66.7
BcaC06g30598 Brassica carinata HOM05D003882 ORTHO05D004598 1.1e-11 72.8 45 71.1
Oeu033367.1 Olea europaea HOM05D003882 ORTHO05D004598 1.1e-11 72.8 49 77.6
Lj1g0018394 Lotus japonicus HOM05D003882 ORTHO05D004598 1.9e-11 72.0 43 74.4
A03p51550 Brassica napus HOM05D003882 ORTHO05D000252 5.5e-11 70.5 62 58.1
Cfa021752 Carpinus fangiana HOM05D003882 ORTHO05D004598 5.5e-11 70.5 35 82.9
Sabra16G0217800 Salix brachista HOM05D003882 ORTHO05D004598 5.5e-11 70.5 50 72.0
Rhsim10G0010900 Rhododendron simsii HOM05D003882 ORTHO05D004598 9.3e-11 69.7 33 90.9
BolC7t45504H Brassica oleracea HOM05D003882 ORTHO05D000252 3.5e-10 67.8 62 56.5
Peaxi162Scf00169g00820 Petunia axillaris HOM05D003882 ORTHO05D004598 3.5e-10 67.8 50 70.0
FAN02G2946 Fragaria x ananassa HOM05D003882 ORTHO05D004598 7.9e-10 66.6 38 68.4


User provided reference genes

Program Settings