Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 3787.7 1905 100.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2795.0 1967 73.1
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2584.7 2038 66.5
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2537.7 1968 66.9
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2536.9 1966 66.6
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2468.0 1967 64.3
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2445.2 1977 64.3
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2432.1 1956 64.9
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2427.5 2171 60.1
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2392.8 1970 62.8
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2387.1 1960 63.0
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2364.3 1957 63.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2363.6 1958 62.8
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2359.7 1957 62.6
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2355.1 1954 61.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2349.3 1992 62.4
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2343.5 1966 61.6
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2342.4 2139 59.2
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2342.0 1978 60.8
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2328.9 1938 63.4
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2325.8 1944 61.2
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2325.1 1866 63.1
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2319.7 1964 60.6
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2317.0 1942 62.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2309.3 1972 61.6
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2307.7 1964 60.4
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2307.7 1964 60.8
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2307.3 1938 60.7
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2306.6 1944 60.7
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2301.6 1974 60.1
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2298.9 1970 60.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2291.5 1960 60.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2285.8 1966 60.6
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2278.4 1945 60.8
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2270.0 1968 60.0
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2270.0 1974 59.6
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2263.4 1941 60.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2257.6 1957 59.7
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2249.2 1932 59.7
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2248.0 1964 59.8
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2244.2 1965 59.8
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2230.7 2162 55.6
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2224.5 1971 59.1
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2223.0 1954 60.5
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2214.9 1976 58.6
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2207.2 1955 59.8
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2201.4 1971 58.4
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2196.0 1962 58.9
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2190.2 1968 58.1
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2189.5 1962 58.8
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2175.6 1924 60.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2173.7 1816 60.6
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2169.4 1960 58.4
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2140.9 1959 57.2
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2135.5 2257 51.6
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2129.0 1959 57.5
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2106.3 1950 56.5
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2103.2 1806 61.0
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2098.9 1937 56.4
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2091.2 1961 55.8
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2090.8 1945 56.1
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2086.6 1923 56.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2083.5 1935 56.7
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2077.8 1972 55.4
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2077.0 1958 55.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2073.1 1957 55.8
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2066.2 1923 56.3
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2062.3 1980 54.9
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2060.0 1949 54.9
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2027.7 1971 54.0
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2022.3 1948 56.1
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2014.2 1601 65.6
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2009.6 1952 54.3
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1935.6 1990 52.4
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1915.2 1932 52.3
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1900.9 1816 55.0
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1835.8 1981 51.1
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1643.2 1280 65.2
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1568.5 1190 67.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1421.8 1271 59.3
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1358.2 1837 42.6
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1270.8 2034 38.4
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1259.2 1431 48.2
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1258.4 1079 61.2
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1243.4 1978 38.4
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1168.7 2020 36.1
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1119.0 997 59.9
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1117.8 1169 52.6
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 3.5e-299 1032.7 2117 33.5
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.3e-274 951.0 762 62.5
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.9e-254 882.5 960 51.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.3e-248 864.8 886 52.4
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.7e-248 863.2 774 58.1
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-241 841.6 1106 44.8
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.8e-239 834.3 1015 45.8
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.2e-220 770.0 976 45.4
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 2.1e-187 661.4 670 53.0
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 9.0e-178 629.4 478 66.5
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 3.4e-177 627.5 526 60.6
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 2.3e-173 614.8 532 58.5
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.1e-164 585.9 521 59.7
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 6.3e-139 500.4 393 64.1
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 9.1e-138 496.5 453 55.8
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.4e-132 477.6 433 55.7
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.2e-128 465.3 291 77.3
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.6e-126 459.1 655 43.8
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.2e-120 438.7 844 34.2
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 3.8e-104 384.8 334 58.1
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 7.0e-98 364.0 216 82.9
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.3e-96 359.0 369 51.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.1e-93 348.6 254 63.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.1e-85 323.6 338 53.8
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.0e-76 292.7 227 63.9
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 8.1e-70 270.8 190 66.8
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.2e-67 262.7 407 42.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.2e-67 262.7 231 56.7
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.8e-67 261.9 190 64.2
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.8e-59 235.3 304 42.8
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 7.1e-50 204.5 516 29.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.0e-44 186.4 164 53.7
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.5e-42 179.5 298 36.2
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 7.9e-41 174.5 296 39.2
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.2e-35 156.4 278 36.7
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 2.5e-31 142.9 94 71.3
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.7e-30 139.0 95 72.6
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.0e-28 133.3 139 51.1
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.7e-27 130.2 226 36.3
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.5e-27 127.9 141 50.4
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.6e-25 122.5 297 30.3
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 4.6e-25 122.1 145 44.1
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 6.1e-25 121.7 99 61.6
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 4.3e-23 115.5 148 46.6
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.1e-21 110.9 125 47.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 6.5e-19 101.7 189 35.4
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 5.5e-18 98.6 75 65.3
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 6.1e-17 95.1 145 42.8
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.9e-16 92.4 157 39.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.4e-15 89.0 79 53.2
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.3e-14 87.4 99 50.5
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.8e-13 83.6 83 56.6
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.1e-13 82.8 74 52.7
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.1e-13 82.8 74 52.7
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 7.0e-13 81.6 74 51.4
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 9.1e-13 81.3 120 37.5
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 5.9e-12 78.6 53 66.0
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.7e-11 77.0 118 37.3
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 8.5e-11 74.7 94 41.5
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 5.5e-10 72.0 58 62.1
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 9.4e-10 71.2 137 37.2
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 4.7e-09 68.9 122 39.3
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 8.0e-09 68.2 46 69.6
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 8.0e-09 68.2 128 31.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.8e-08 67.0 116 37.1
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.8e-08 67.0 116 37.1
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 9.7e-07 61.2 88 38.6
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 1.3e-06 60.8 54 48.1
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 3.7e-06 59.3 54 48.1
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 4.8e-06 58.9 127 29.1


User provided reference genes

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