Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41A12T25 Lonicera japonica HOM05D000007 ORTHO05D016171 3.6e-134 481.5 228 100.0
Lju41C12T10 Lonicera japonica HOM05D000007 ORTHO05D000039 6.0e-105 384.4 273 71.4
Lju41C12T8 Lonicera japonica HOM05D000007 ORTHO05D000039 1.6e-97 359.8 230 75.7
Lju41C24G4 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-74 283.9 264 58.3
Lju41C11T9 Lonicera japonica HOM05D000007 ORTHO05D000039 6.1e-41 171.8 233 45.5
Lju41C12T7 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-38 163.7 214 45.3
Lj5A746T19 Lonicera japonica HOM05D000007 ORTHO05D000039 5.9e-28 128.6 209 38.8
Lj7C597G11 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-21 105.5 203 31.5
Lj5C746T3 Lonicera japonica HOM05D000007 ORTHO05D000039 7.0e-21 105.1 186 36.0
Lj5C746T5 Lonicera japonica HOM05D001538 ORTHO05D029994 7.0e-21 105.1 186 36.0
Dinv06511 Davidia involucrata HOM05D000007 ORTHO05D000039 4.6e-20 102.4 187 33.7
Ciclev10027518m.g Citrus clementina HOM05D000007 ORTHO05D000039 3.0e-19 99.8 196 29.1
Lj2P997T15 Lonicera japonica HOM05D000007 ORTHO05D000039 3.0e-19 99.8 244 30.7
Dinv34988 Davidia involucrata HOM05D000007 ORTHO05D000039 6.6e-19 98.6 198 31.8
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-18 97.8 198 32.8
Dinv34983 Davidia involucrata HOM05D000007 ORTHO05D000039 2.1e-17 93.6 189 31.7
Lj7P401T34 Lonicera japonica HOM05D000007 ORTHO05D000039 4.0e-16 89.4 207 29.0
Rhsim12G0135700 Rhododendron simsii HOM05D000298 ORTHO05D000039 5.2e-16 89.0 187 29.9
Ciclev10026927m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.5e-15 87.4 193 31.1
Lj5C836T3 Lonicera japonica HOM05D000007 ORTHO05D000039 2.9e-14 83.2 220 29.1
Lj5C843G4 Lonicera japonica HOM05D000007 ORTHO05D000039 3.7e-14 82.8 220 29.5
Ciclev10003888m.g Citrus clementina HOM05D000007 ORTHO05D000039 6.4e-14 82.0 186 32.3
Ciclev10027079m.g Citrus clementina HOM05D000007 ORTHO05D000039 8.3e-14 81.6 188 31.4
Ciclev10003412m.g Citrus clementina HOM05D000007 ORTHO05D000039 3.2e-13 79.7 183 29.5
Sopen09g004210 Solanum pennellii HOM05D016135 ORTHO05D016171 4.1e-13 79.3 196 31.1
TWI60G1487 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.1e-13 79.3 197 29.9
CiPaw.04G017800 Carya illinoinensis HOM05D000007 ORTHO05D000039 1.2e-12 77.8 197 28.9
Lj2A997G27 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-12 77.8 212 29.7
Duzib114G0761 Durio zibethinus HOM05D000007 ORTHO05D000039 2.1e-12 77.0 193 29.5
Lj2C989T3 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-12 77.0 215 29.3
PGSC0003DMG400002700 Solanum tuberosum HOM05D016135 ORTHO05D016171 3.5e-12 76.3 195 29.7
Thecc.10G169100 Theobroma cacao HOM05D000007 ORTHO05D000039 4.6e-12 75.9 194 29.4
Lju41C16T0 Lonicera japonica HOM05D000007 ORTHO05D000039 1.0e-11 74.7 171 31.0
Gohir.D10G123400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.3e-11 73.6 196 28.1
QL05p044326 Quercus lobata HOM05D000007 ORTHO05D000039 3.9e-11 72.8 170 31.2
Ciclev10027421m.g Citrus clementina HOM05D000007 ORTHO05D000039 5.1e-11 72.4 181 31.5
Gorai.011G135900 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.1e-10 71.2 198 28.3
Lj2C989T8 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-10 71.2 236 28.0
QL04p029136 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-10 71.2 176 25.0
Dinv06538 Davidia involucrata HOM05D000007 ORTHO05D000039 1.9e-10 70.5 189 27.0
Potri.012G099733 Populus trichocarpa HOM05D000007 ORTHO05D000039 1.9e-10 70.5 194 26.3
Prupe.3G110000 Prunus persica HOM05D000007 ORTHO05D000039 1.9e-10 70.5 205 27.3
Thecc.09G278300 Theobroma cacao HOM05D000007 ORTHO05D000039 1.9e-10 70.5 202 27.2
Ciclev10027392m.g Citrus clementina HOM05D000007 ORTHO05D000039 2.5e-10 70.1 184 26.6
Thecc.10G092800 Theobroma cacao HOM05D000007 ORTHO05D000039 2.5e-10 70.1 195 27.7
Gohir.A10G143700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.3e-10 69.7 198 28.3
Lju41C15G6 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-10 69.7 224 26.3
QL05p044233 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-10 69.3 191 28.8
QL04p029261 Quercus lobata HOM05D000007 ORTHO05D000039 7.3e-10 68.6 191 28.8
Duzib150G0476 Durio zibethinus HOM05D000007 ORTHO05D000039 9.5e-10 68.2 202 25.7
Solyc07g044920.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 9.5e-10 68.2 203 26.6
Aqoxy5G04199 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.6e-09 66.2 172 29.7
Potri.005G114900 Populus trichocarpa HOM05D000007 ORTHO05D000039 3.6e-09 66.2 222 25.7
GSVIVG01013506001 Vitis vinifera HOM05D000007 ORTHO05D000039 4.7e-09 65.9 191 28.8
Solyc09g009480.1 Solanum lycopersicum HOM05D016135 ORTHO05D016171 6.2e-09 65.5 149 29.5
Duzib114G0947 Durio zibethinus HOM05D000007 ORTHO05D000039 8.1e-09 65.1 187 28.9
EL10Ac9g22770 Beta vulgaris HOM05D000007 ORTHO05D000039 1.1e-08 64.7 165 26.1
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 1.1e-08 64.7 196 25.0
Dinv06536 Davidia involucrata HOM05D000007 ORTHO05D000039 1.8e-08 63.9 171 26.9
Dinv06537 Davidia involucrata HOM05D000007 ORTHO05D000039 1.8e-08 63.9 194 24.7
Thecc.10G169200 Theobroma cacao HOM05D000007 ORTHO05D000039 1.8e-08 63.9 190 28.9
TWI60G0485 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.8e-08 63.9 200 28.0
TWI81G0699 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.8e-08 63.9 206 24.8
FAN21G2664 Fragaria x ananassa HOM05D000007 ORTHO05D005026 2.3e-08 63.5 169 27.2
Gorai.011G136300 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.3e-08 63.5 185 27.0
Gorai.011G281100 Gossypium raimondii HOM05D000007 ORTHO05D000039 3.1e-08 63.2 173 28.3
TAR626G0901 Trochodendron aralioides HOM05D000007 ORTHO05D000017 3.1e-08 63.2 173 27.2
Cfa007564 Carpinus fangiana HOM05D000007 ORTHO05D000039 6.8e-08 62.0 197 26.9
Cfa017234 Carpinus fangiana HOM05D000007 ORTHO05D000039 6.8e-08 62.0 202 26.2
AUR62015056 Chenopodium quinoa HOM05D000007 ORTHO05D000039 6.8e-08 62.0 195 28.2
FAN21G3977 Fragaria x ananassa HOM05D000007 ORTHO05D005026 8.9e-08 61.6 217 24.9
Hma1.2p1_0036F.1_g023650 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 8.9e-08 61.6 177 25.4
Nitab4.5_0005483g0060 Nicotiana tabacum HOM05D016135 ORTHO05D016171 8.9e-08 61.6 157 27.4
Peaxi162Scf00152g00825 Petunia axillaris HOM05D000007 ORTHO05D000039 1.2e-07 61.2 189 27.0
Gorai.011G274400 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.5e-07 60.8 171 26.9
Nitab4.5_0003693g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.5e-07 60.8 189 26.5
Manes.04G093500 Manihot esculenta HOM05D000007 ORTHO05D000039 2.0e-07 60.5 171 24.6
TWI59G1353 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.0e-07 60.5 193 24.9
Aqoxy1G04047 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 2.6e-07 60.1 174 26.4
CiPaw.14G019500 Carya illinoinensis HOM05D000007 ORTHO05D000039 2.6e-07 60.1 197 26.9
Gohir.D10G241100 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.6e-07 60.1 173 27.2
Gorai.011G276100 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.6e-07 60.1 173 26.6
Peaxi162Scf00074g00039 Petunia axillaris HOM05D000007 ORTHO05D000039 3.4e-07 59.7 198 26.3
Actinidia10577 Actinidia chinensis HOM05D000007 ORTHO05D000039 4.4e-07 59.3 192 24.5
Gohir.D10G241000 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.4e-07 59.3 172 26.7
Gohir.D10G241008 Gossypium hirsutum HOM05D000007 ORTHO05D000039 5.8e-07 58.9 172 26.7
Gohir.D10G241700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 5.8e-07 58.9 173 27.2
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 5.8e-07 58.9 194 24.2
Manes.02G207000 Manihot esculenta HOM05D000007 ORTHO05D000039 5.8e-07 58.9 184 23.4
Manes.04G076886 Manihot esculenta HOM05D000007 ORTHO05D000039 5.8e-07 58.9 184 23.4
TWI63G0287 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 5.8e-07 58.9 192 26.0
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 5.8e-07 58.9 208 27.4
CiPaw.07G024200 Carya illinoinensis HOM05D000007 ORTHO05D000039 7.6e-07 58.5 196 28.1
Gohir.D10G238608 Gossypium hirsutum HOM05D000007 ORTHO05D000039 7.6e-07 58.5 171 26.3
COL.COLO4_22623 Corchorus olitorius HOM05D000007 ORTHO05D000039 9.9e-07 58.2 210 25.7
Haze_20972 Corylus avellana HOM05D000007 ORTHO05D000039 9.9e-07 58.2 202 24.8
Manes.04G081665 Manihot esculenta HOM05D000007 ORTHO05D000039 9.9e-07 58.2 208 24.0
Manes.14G121600 Manihot esculenta HOM05D000007 ORTHO05D000039 9.9e-07 58.2 184 22.8
Dinv04466 Davidia involucrata HOM05D000007 ORTHO05D000039 1.3e-06 57.8 182 22.0
Gohir.D10G240516 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.3e-06 57.8 172 26.2
Gorai.011G276700 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.3e-06 57.8 172 26.7
Gorai.011G276600 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.7e-06 57.4 179 27.4
Manes.04G078479 Manihot esculenta HOM05D000007 ORTHO05D000039 1.7e-06 57.4 215 24.2
Manes.04G082727 Manihot esculenta HOM05D000007 ORTHO05D000039 1.7e-06 57.4 215 24.2
Peaxi162Scf00608g00048 Petunia axillaris HOM05D000007 ORTHO05D000039 1.7e-06 57.4 192 24.0
ECA234G0586 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.2e-06 57.0 165 26.1
Manes.04G077417 Manihot esculenta HOM05D000007 ORTHO05D000039 2.2e-06 57.0 184 22.8
Manes.04G077948 Manihot esculenta HOM05D000007 ORTHO05D000039 2.2e-06 57.0 184 22.8
Manes.04G081134 Manihot esculenta HOM05D000007 ORTHO05D000039 2.2e-06 57.0 184 22.8
Gorai.011G281200 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.9e-06 56.6 172 27.9
Lj1g0023224 Lotus japonicus HOM05D000007 ORTHO05D000039 2.9e-06 56.6 196 25.0
Manes.04G079541 Manihot esculenta HOM05D000007 ORTHO05D000039 2.9e-06 56.6 177 23.7
Nitab4.5_0009868g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.9e-06 56.6 195 27.2
Psat7g148960 Pisum sativum HOM05D000007 ORTHO05D000039 2.9e-06 56.6 150 30.7
Haze_13252 Corylus avellana HOM05D000007 ORTHO05D000039 3.7e-06 56.2 167 27.5
Dinv24586 Davidia involucrata HOM05D000007 ORTHO05D000039 3.7e-06 56.2 196 26.0
Gohir.D10G240608 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.7e-06 56.2 178 27.0
Gohir.D10G241400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.7e-06 56.2 178 27.0
Lj5C746G5 Lonicera japonica HOM05D000007 ORTHO05D000039 3.7e-06 56.2 76 43.4
Manes.04G085700 Manihot esculenta HOM05D000007 ORTHO05D000039 3.7e-06 56.2 169 24.9
Nitab4.5_0006722g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 3.7e-06 56.2 76 39.5
RcHm_v2.0_Chr5g0072031 Rosa chinensis HOM05D000007 ORTHO05D005026 3.7e-06 56.2 171 25.7
Thecc.10G168100 Theobroma cacao HOM05D000007 ORTHO05D000039 3.7e-06 56.2 95 31.6
Cc05_g06410 Coffea canephora HOM05D000007 ORTHO05D000039 4.9e-06 55.8 200 29.0
DCAR_004305 Daucus carota HOM05D000007 ORTHO05D000017 4.9e-06 55.8 175 29.7
Dinv05293 Davidia involucrata HOM05D000007 ORTHO05D000039 4.9e-06 55.8 146 28.1
Gohir.A10G227401 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.9e-06 55.8 173 27.2
Gohir.A10G227601 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.9e-06 55.8 172 28.5
Thecc.10G168500 Theobroma cacao HOM05D000007 ORTHO05D000039 4.9e-06 55.8 223 27.4
Gohir.D10G241600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 6.4e-06 55.5 174 28.2
vmacro23187 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 6.4e-06 55.5 185 27.6
Cfa000444 Carpinus fangiana HOM05D000007 ORTHO05D000039 8.4e-06 55.1 195 26.2
CiPaw.07G024100 Carya illinoinensis HOM05D000007 ORTHO05D000039 8.4e-06 55.1 196 27.0
CsaV3_6G037500 Cucumis sativus L. HOM05D000007 ORTHO05D000039 8.4e-06 55.1 192 24.5
HanXRQChr13g0397331 Helianthus annuus HOM05D000007 ORTHO05D000039 8.4e-06 55.1 193 24.4
Manes.04G083258 Manihot esculenta HOM05D000007 ORTHO05D000039 8.4e-06 55.1 177 23.7
Manes.04G093401 Manihot esculenta HOM05D000007 ORTHO05D000039 8.4e-06 55.1 188 24.5
vmacro23030 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 8.4e-06 55.1 185 27.6


User provided reference genes

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