Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 7.8e-49 196.8 100 100.0
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.2e-38 160.6 94 86.2
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-34 149.1 99 81.8
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 9.2e-34 146.7 98 80.6
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 9.2e-34 146.7 98 80.6
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-32 142.9 98 79.6
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-32 142.9 106 75.5
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-32 142.1 98 80.6
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-31 138.7 98 77.6
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.2e-20 103.2 96 57.3
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.0e-20 102.4 88 59.1
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 6.4e-19 97.4 91 60.4
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 3.2e-18 95.1 83 61.4
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 7.9e-17 90.5 84 57.1
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 7.9e-17 90.5 95 51.6
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.0e-16 90.1 78 60.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.3e-16 89.7 81 59.3
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.3e-16 89.7 81 56.8
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.8e-16 89.4 98 48.0
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 3.0e-16 88.6 83 55.4
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 5.1e-16 87.8 88 58.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 5.1e-16 87.8 78 55.1
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 6.7e-16 87.4 81 55.6
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.9e-15 85.9 84 52.4
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.9e-15 85.9 82 52.4
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.3e-15 85.1 74 59.5
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 4.3e-15 84.7 85 51.8
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.6e-15 84.3 81 56.8
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 5.6e-15 84.3 82 46.3
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 9.6e-15 83.6 81 54.3
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 9.6e-15 83.6 90 48.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.3e-14 83.2 84 52.4
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.3e-14 83.2 90 48.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.3e-14 83.2 82 52.4
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.6e-14 82.8 83 55.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.6e-14 82.8 84 52.4
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.8e-14 82.0 97 46.4
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.7e-14 81.6 78 56.4
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 3.7e-14 81.6 81 55.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.2e-14 80.9 78 55.1
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 8.1e-14 80.5 78 52.6
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 8.1e-14 80.5 97 47.4
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 8.1e-14 80.5 81 50.6
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-13 80.1 81 50.6
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.4e-13 79.7 79 49.4
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.4e-13 79.7 77 59.7
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 2.4e-13 79.0 82 50.0
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-13 78.6 81 50.6
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 3.1e-13 78.6 81 51.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.0e-13 78.2 81 49.4
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 5.3e-13 77.8 81 46.9
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 5.3e-13 77.8 92 51.1
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 6.9e-13 77.4 81 46.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 6.9e-13 77.4 90 45.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 9.0e-13 77.0 78 53.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 9.0e-13 77.0 80 51.2
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.5e-12 76.3 81 48.1
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.0e-12 75.9 93 44.1
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.0e-12 75.9 77 58.4
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.6e-12 75.5 87 42.5
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.6e-12 75.5 81 49.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.6e-12 75.5 83 48.2
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-12 75.1 90 44.4
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 3.4e-12 75.1 87 44.8
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 3.4e-12 75.1 77 49.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 4.5e-12 74.7 97 46.4
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.5e-12 74.7 97 46.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.5e-12 74.7 97 46.4
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 7.6e-12 73.9 84 47.6
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 7.6e-12 73.9 78 52.6
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-11 73.6 83 49.4
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.3e-11 73.2 90 44.4
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.3e-11 73.2 82 47.6
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.7e-11 72.8 81 49.4
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.7e-11 72.8 72 48.6
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.1e-10 70.1 85 44.7
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 2.5e-10 68.9 81 46.9
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 3.2e-10 68.6 82 45.1
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 4.2e-10 68.2 82 43.9
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.5e-10 67.8 54 68.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.2e-09 66.6 92 40.2
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.6e-09 66.2 88 42.0
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.1e-09 65.9 92 40.2
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 2.1e-09 65.9 78 47.4
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.1e-09 65.9 79 41.8
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 3.5e-09 65.1 88 48.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 4.6e-09 64.7 77 45.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.0e-08 63.5 92 38.0
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.0e-08 63.5 88 38.6
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.0e-08 63.5 81 46.9
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-08 63.2 91 38.5
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.3e-08 62.4 87 40.2
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.3e-08 62.4 84 41.7
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.9e-08 61.6 78 43.6
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.9e-08 61.6 75 44.0
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 5.1e-08 61.2 81 44.4
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 5.1e-08 61.2 95 35.8
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 8.7e-08 60.5 88 37.5
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.1e-07 60.1 88 38.6
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.1e-07 60.1 78 44.9
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.1e-07 60.1 95 35.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.9e-07 59.3 89 38.2
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 3.3e-07 58.5 78 43.6
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 4.3e-07 58.2 88 38.6
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.3e-07 58.2 92 37.0
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 4.3e-07 58.2 88 38.6
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 4.3e-07 58.2 88 38.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.3e-07 58.2 92 37.0
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 5.7e-07 57.8 88 36.4
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 5.7e-07 57.8 77 42.9
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 7.4e-07 57.4 88 36.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 7.4e-07 57.4 77 40.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 9.6e-07 57.0 78 42.3
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 9.6e-07 57.0 77 42.9
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.3e-06 56.6 78 44.9


User provided reference genes

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