Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-69 264.2 136 100.0
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 7.3e-66 253.8 135 95.6
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-62 241.9 136 91.9
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-58 228.8 131 90.1
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-55 217.2 121 92.6
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-53 212.6 126 89.7
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-41 171.4 112 82.1
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 3.5e-36 155.2 134 63.4
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 9.6e-34 147.1 131 63.4
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 6.2e-33 144.4 110 66.4
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-32 143.7 98 80.6
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.4e-32 142.5 96 76.0
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.1e-32 142.1 95 83.2
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 4.0e-32 141.7 110 69.1
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.8e-31 137.9 127 59.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 6.5e-30 134.4 110 67.3
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 8.4e-30 134.0 121 58.7
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 1.1e-29 133.7 118 61.9
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.1e-29 133.7 121 62.8
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.9e-29 132.9 109 63.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 2.5e-29 132.5 127 58.3
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.5e-29 132.5 110 63.6
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 5.5e-29 131.3 126 60.3
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.6e-28 129.8 131 51.9
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.1e-28 129.4 118 59.3
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.7e-28 129.0 114 64.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.7e-28 129.0 120 56.7
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.7e-28 129.0 110 63.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 4.6e-28 128.3 118 58.5
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.0e-28 127.9 110 60.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 6.0e-28 127.9 110 61.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.9e-28 127.5 116 58.6
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 7.9e-28 127.5 123 61.0
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.8e-27 126.3 110 62.7
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.3e-27 125.9 122 60.7
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 5.1e-27 124.8 117 56.4
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 6.7e-27 124.4 134 53.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.1e-26 123.6 111 59.5
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.5e-26 123.2 130 53.1
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.5e-26 123.2 117 59.0
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-26 123.2 117 59.0
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-26 123.2 117 59.0
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.9e-26 122.9 111 58.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.9e-26 122.9 112 61.6
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.9e-26 122.9 137 51.1
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.9e-26 122.9 124 57.3
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.5e-26 122.5 124 55.6
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.3e-26 122.1 110 60.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 4.3e-26 121.7 112 61.6
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 5.7e-26 121.3 116 53.4
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 5.7e-26 121.3 112 61.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 5.7e-26 121.3 113 60.2
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 5.7e-26 121.3 128 53.9
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.7e-26 121.3 126 54.8
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.4e-26 120.9 111 58.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 7.4e-26 120.9 108 59.3
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.3e-25 120.2 110 58.2
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.6e-25 119.8 126 55.6
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.6e-25 119.8 116 52.6
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.6e-25 119.8 113 59.3
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.2e-25 119.4 109 55.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.2e-25 119.4 110 63.6
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-25 119.0 111 57.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.8e-25 119.0 110 58.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.8e-25 119.0 112 60.7
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.8e-25 119.0 112 58.9
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.8e-25 119.0 130 53.1
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 8.2e-25 117.5 110 51.8
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.1e-24 117.1 109 57.8
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-24 116.7 111 57.7
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.4e-24 115.9 110 62.7
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 4.1e-24 115.2 107 57.9
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 5.3e-24 114.8 112 56.2
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.2e-23 113.6 112 55.4
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.2e-23 113.6 118 53.4
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.5e-23 113.2 113 55.8
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.6e-23 112.5 114 54.4
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 3.4e-23 112.1 108 60.2
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.3e-22 110.2 118 56.8
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.7e-22 109.8 106 59.4
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.2e-22 109.4 130 50.0
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 3.8e-22 108.6 125 52.0
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 8.5e-22 107.5 126 52.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.1e-21 107.1 121 50.4
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.1e-21 107.1 106 58.5
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.5e-21 105.9 105 56.2
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 9.4e-21 104.0 106 56.6
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.7e-20 102.4 116 48.3
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.8e-19 99.8 103 55.3
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.8e-19 99.8 121 47.1
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.8e-19 99.8 114 49.1
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.3e-19 99.4 120 49.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.1e-19 98.2 113 49.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 5.1e-19 98.2 104 51.0
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 8.8e-19 97.4 121 44.6
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.1e-18 97.1 106 52.8
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.5e-18 96.7 113 48.7
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 4.3e-18 95.1 107 50.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.3e-18 95.1 121 44.6
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.3e-18 95.1 113 48.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 5.7e-18 94.7 121 43.8
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 5.7e-18 94.7 121 43.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 7.4e-18 94.4 106 50.9
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 7.4e-18 94.4 111 48.6
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-17 93.6 106 50.0
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 1.7e-17 93.2 106 50.9
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 1.7e-17 93.2 106 50.9
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.7e-17 93.2 121 43.8
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 2.2e-17 92.8 107 52.3
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.2e-17 92.8 120 45.0
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 3.7e-17 92.0 115 47.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 3.7e-17 92.0 115 47.0
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 4.8e-17 91.7 106 50.9
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 6.3e-17 91.3 121 43.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 4.5e-15 85.1 105 49.5
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 5.9e-15 84.7 104 50.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.0e-14 84.0 107 47.7
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.5e-13 78.2 88 48.9
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.0e-11 73.9 66 59.1
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-11 73.9 84 51.2
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.8e-11 73.2 105 42.9
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 3.9e-11 72.0 107 43.0


User provided reference genes

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