Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-102 376.7 191 100.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-99 365.2 191 96.3
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-97 359.0 191 93.7
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.6e-95 351.7 191 93.7
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-78 294.3 204 77.9
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 4.2e-75 285.0 190 74.2
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.3e-71 273.5 191 68.1
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 4.0e-70 268.5 190 67.9
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.3e-68 263.5 191 68.6
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.1e-67 260.4 191 66.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-67 260.0 190 68.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.9e-67 259.6 189 65.6
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.3e-67 257.3 190 67.9
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.7e-66 255.8 189 67.2
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.7e-66 255.8 191 67.5
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.6e-66 255.0 190 67.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 4.6e-66 255.0 176 68.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.6e-66 255.0 176 68.2
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 4.6e-66 255.0 180 68.3
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 4.6e-66 255.0 190 68.4
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.3e-65 253.4 191 64.4
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.3e-65 252.7 191 66.5
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.3e-65 252.7 180 68.3
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.3e-65 252.7 187 65.8
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 3.9e-65 251.9 188 65.4
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 8.7e-65 250.8 170 70.6
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.7e-65 250.8 176 67.0
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.1e-64 250.4 176 67.0
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.1e-64 250.4 191 65.4
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.5e-64 250.0 170 68.8
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.5e-64 250.0 170 68.8
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.5e-64 250.0 170 68.8
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.9e-64 249.6 170 68.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.5e-64 249.2 170 67.6
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.5e-64 249.2 170 68.8
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 3.3e-64 248.8 190 67.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 3.3e-64 248.8 190 67.4
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 3.3e-64 248.8 186 66.1
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 3.3e-64 248.8 188 66.5
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 7.4e-64 247.7 199 60.8
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.4e-64 247.7 191 65.4
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 7.4e-64 247.7 191 64.9
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 7.4e-64 247.7 191 62.3
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 9.6e-64 247.3 181 66.9
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.3e-63 246.9 188 64.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.6e-63 246.5 179 68.7
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 2.1e-63 246.1 170 67.6
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.6e-63 245.4 189 65.6
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.6e-63 245.4 191 64.4
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 6.2e-63 244.6 191 61.8
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 8.1e-63 244.2 127 98.4
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.1e-62 243.8 191 63.9
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.8e-62 243.0 186 66.1
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.4e-62 242.7 186 65.6
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 2.4e-62 242.7 191 63.4
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 3.1e-62 242.3 171 67.8
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 3.1e-62 242.3 171 67.8
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.1e-62 242.3 188 63.3
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.1e-62 242.3 190 63.7
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 6.9e-62 241.1 184 64.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-61 240.4 171 66.7
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.2e-61 240.4 171 66.7
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.6e-61 239.2 185 64.9
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 7.6e-61 237.7 185 64.3
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.3e-60 236.9 187 65.8
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 2.2e-60 236.1 191 62.8
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.9e-60 235.7 191 60.7
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 6.4e-60 234.6 178 65.7
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.4e-60 234.6 154 74.0
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 6.4e-60 234.6 178 65.2
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 8.4e-60 234.2 191 64.9
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.4e-60 234.2 173 66.5
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.9e-59 233.0 178 65.2
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.4e-59 232.6 194 59.8
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.4e-59 232.6 187 61.5
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 9.3e-59 230.7 200 59.5
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.6e-58 229.9 191 60.7
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-58 229.6 121 93.4
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.1e-58 229.6 178 64.0
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 6.0e-58 228.0 157 69.4
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.3e-57 226.9 200 58.5
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-57 226.5 159 70.4
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.8e-57 226.5 176 63.6
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.8e-57 226.5 178 63.5
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.9e-57 225.3 176 63.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.1e-56 223.8 178 61.8
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-56 223.0 158 70.3
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.5e-56 222.6 191 60.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.5e-56 222.6 178 61.8
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 4.3e-56 221.9 191 58.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.3e-56 221.9 183 59.0
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 5.6e-56 221.5 183 61.7
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 7.4e-56 221.1 157 66.2
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-55 220.3 183 68.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.6e-55 219.9 191 59.2
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.1e-55 219.5 187 60.4
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.7e-55 218.8 138 76.8
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.8e-55 218.4 165 66.1
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 4.8e-55 218.4 190 58.4
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 4.8e-55 218.4 189 58.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.8e-54 216.5 184 61.4
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 5.3e-54 214.9 173 63.0
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.3e-54 214.9 191 55.5
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 7.6e-53 211.1 199 57.8
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.7e-52 209.9 188 58.0
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 2.9e-52 209.1 144 68.8
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 3.2e-51 205.7 243 49.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 5.5e-51 204.9 150 66.7
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.6e-50 203.4 178 55.6
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.7e-50 202.6 148 67.6
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 4.3e-48 195.3 141 70.2
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.3e-47 193.7 163 57.7
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.3e-47 193.7 171 55.0
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.1e-47 193.0 195 56.4
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-45 186.8 163 62.0
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 4.6e-42 175.3 173 57.2
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 6.1e-42 174.9 154 55.2
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-39 165.6 148 65.5
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 3.7e-39 165.6 182 52.7
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.2e-39 164.5 190 51.1
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 5.0e-36 155.2 170 45.3
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 5.5e-35 151.8 158 52.5
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.6e-32 142.9 106 65.1
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 9.7e-32 141.0 183 44.3
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.3e-31 140.6 158 48.7
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-31 139.8 90 85.6
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 5.9e-29 131.7 89 68.5
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.7e-28 130.2 157 45.9
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-26 123.6 80 81.2
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-25 120.9 78 73.1
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-25 120.2 176 43.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.8e-23 112.8 74 74.3
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 5.9e-13 78.6 156 36.5
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 7.7e-13 78.2 60 65.0
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 7.7e-13 78.2 177 35.6
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.3e-12 77.4 186 29.6
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 6.5e-12 75.1 55 63.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 7.2e-11 71.6 34 100.0
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 3.0e-09 66.2 144 34.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.2e-08 64.3 42 73.8
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.7e-07 60.5 49 59.2


User provided reference genes

Program Settings