Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 0.0e+00 1454.5 791 100.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 4.1e-286 988.0 829 71.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.4e-278 962.2 824 69.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.0e-278 960.7 829 67.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 5.1e-268 927.9 847 66.7
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 3.8e-263 911.8 835 64.1
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.9e-263 911.4 896 58.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 3.2e-262 908.7 832 64.1
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 7.8e-261 904.0 832 64.3
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.9e-255 885.6 832 62.4
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.1e-251 873.6 836 62.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.5e-251 873.2 832 59.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.9e-251 872.8 847 62.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.3e-251 872.1 831 62.3
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 3.3e-251 872.1 832 62.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.6e-250 869.8 845 61.1
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.4e-249 865.9 824 62.6
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.9e-247 859.0 839 59.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.7e-245 852.4 838 61.3
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 6.7e-244 847.8 830 61.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.7e-244 847.8 831 59.3
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 6.7e-244 847.8 833 59.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.5e-243 846.7 827 60.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 9.6e-243 844.0 831 60.3
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.6e-242 843.2 827 61.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 8.1e-242 840.9 828 60.0
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.1e-241 839.0 831 59.3
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 4.0e-241 838.6 835 59.2
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 9.0e-241 837.4 829 59.3
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.2e-240 837.0 838 61.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.5e-240 836.6 837 59.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-239 832.8 841 58.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 8.4e-239 830.9 833 57.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.2e-238 828.9 829 59.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.6e-237 825.1 839 59.5
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-236 823.2 838 58.7
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.1e-235 820.5 832 57.3
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.9e-235 819.7 859 58.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.2e-234 814.3 837 61.1
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 8.2e-234 814.3 830 58.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-233 813.9 841 56.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 2.4e-233 812.8 832 56.7
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 9.0e-233 810.8 833 56.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.5e-232 810.1 807 60.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.2e-231 806.2 844 57.5
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.9e-231 805.1 830 59.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.4e-230 803.5 805 61.2
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 4.2e-230 802.0 834 56.7
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-229 799.3 836 56.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.0e-229 798.1 841 56.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.9e-229 797.7 830 56.3
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.0e-228 797.3 837 55.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.0e-228 797.3 843 55.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.0e-228 795.8 842 56.7
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.1e-227 793.9 841 56.1
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 5.7e-227 791.6 829 56.6
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 9.7e-227 790.8 830 56.3
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 8.2e-226 787.7 828 57.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.8e-225 786.6 830 57.3
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.4e-225 786.2 837 56.3
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.1e-225 785.4 829 58.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 4.5e-224 781.9 828 56.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.5e-224 781.9 840 55.5
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.9e-224 781.6 838 56.3
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.8e-223 778.9 826 56.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.7e-221 772.7 827 56.3
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.0e-216 756.5 833 55.6
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 4.5e-216 755.4 826 58.0
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.7e-213 746.1 839 54.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.4e-211 738.8 832 56.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.4e-209 733.0 844 52.1
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 4.1e-209 732.3 841 54.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.3e-207 727.2 832 55.9
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.6e-203 713.0 804 54.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 9.4e-198 694.5 876 51.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 9.4e-198 694.5 783 56.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 8.0e-197 691.4 828 50.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.2e-195 687.6 828 51.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.5e-190 669.8 849 48.3
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.2e-187 661.0 821 51.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-187 661.0 821 51.4
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 4.8e-186 655.6 817 49.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.8e-185 653.7 827 48.9
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-185 653.3 823 52.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.4e-185 653.3 823 52.4
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.4e-185 653.3 853 48.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 5.4e-185 652.1 822 51.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 5.4e-185 652.1 808 51.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.3e-183 647.5 843 49.7
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 3.3e-182 642.9 846 49.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.2e-181 641.0 850 46.9
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.1e-177 626.3 828 46.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 5.4e-177 625.5 817 48.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.5e-171 607.4 811 48.2
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.9e-162 575.9 862 44.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.3e-159 567.8 847 44.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.5e-158 564.3 685 50.8
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 8.1e-157 558.5 807 44.7
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.2e-156 555.8 563 61.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.7e-154 549.7 680 51.0
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 7.8e-144 515.4 622 50.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.3e-143 514.6 563 57.4
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.6e-135 485.7 538 53.9
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.9e-129 467.6 432 62.0
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.9e-126 457.6 466 61.4
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 5.7e-118 429.5 869 37.4
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.3e-111 408.3 406 65.0
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.1e-110 405.2 820 38.8
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.9e-110 404.4 377 59.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.8e-109 399.8 875 36.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 5.3e-100 369.8 325 63.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.7e-99 365.9 826 36.8
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.4e-94 350.1 340 59.1
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.1e-92 342.4 308 63.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.6e-86 324.3 308 64.3
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.7e-85 320.5 232 73.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-83 315.5 232 72.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 8.5e-82 309.3 289 60.2
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.5e-73 282.0 408 44.9
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 8.0e-72 276.2 940 27.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.7e-66 258.5 456 39.3
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.5e-65 254.6 271 59.4
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 6.1e-64 250.0 218 60.6
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 5.8e-54 216.9 158 71.5
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 9.2e-52 209.5 214 58.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.1e-49 202.6 921 27.3
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.1e-48 198.4 228 51.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 4.0e-47 194.1 162 63.0
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.5e-46 192.2 176 72.2
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-46 191.8 181 59.1
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 9.5e-41 172.9 157 59.9
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.4e-37 159.8 106 76.4
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.4e-37 159.8 132 65.9
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.5e-35 154.5 160 57.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-31 142.5 112 66.1
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 4.2e-28 131.0 142 54.2
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 5.4e-28 130.6 96 69.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.2e-27 129.4 104 64.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.8e-27 126.7 296 32.8
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.1e-25 122.9 76 77.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.6e-24 117.9 119 59.7
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.8e-24 117.5 113 61.9
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 9.0e-23 113.2 124 56.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 6.0e-19 100.5 511 24.9
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.3e-17 94.7 158 35.4
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 9.6e-17 93.2 621 22.7
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-16 92.8 119 51.3
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.4e-14 84.7 50 78.0
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.7e-13 82.4 178 43.3
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.9e-13 81.6 88 50.0
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.7e-11 75.1 65 58.5
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.1e-09 69.7 47 63.8
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 7.4e-09 67.0 188 42.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 7.4e-09 67.0 198 38.9
Actinidia37122 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.8e-08 64.3 162 37.0
Hma1.2p1_0468F.1_g158750 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.8e-07 62.4 88 70.5
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.1e-07 61.6 80 38.8
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 4.0e-07 61.2 92 43.5
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.6e-06 58.5 43 58.1
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.5e-06 57.8 52 57.7
arahy.Tifrunner.gnm1.ann1.K8XNS5 Arachis hypogaea HOM05D004092 ORTHO05D005448 1.0e-05 56.6 79 45.6


User provided reference genes

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