Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju225C0G8 Lonicera japonica HOM05D000002 ORTHO05D000001 4.4e-155 551.2 271 100.0
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 2.9e-66 256.1 158 84.8
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-37 159.8 162 53.1
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-36 157.1 158 54.4
Rhsim02G0101600 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.6e-35 152.5 149 55.7
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.6e-33 145.6 174 50.0
CSS0016107 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-31 141.0 148 47.3
CSS0049708 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-31 141.0 117 59.0
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-28 131.0 147 45.6
CSS0014430 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-28 130.6 110 55.5
Rhsim06G0125700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-28 130.6 180 45.6
CSS0046748 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.2e-28 128.3 166 44.6
CSS0007773 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-23 114.4 192 42.2
CSS0003386 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-23 113.6 171 42.7
CAN.G447.8 Capsicum annuum HOM05D000002 ORTHO05D000001 4.9e-21 105.9 132 46.2
MSTRG.19383 Avicennia marina HOM05D000073 ORTHO05D000033 7.1e-20 102.1 127 43.3
Prupe.4G199600 Prunus persica HOM05D000002 ORTHO05D000001 6.6e-18 95.5 132 39.4
Cpa.g.sc188.27 Carica papaya HOM05D058748 ORTHO05D000001 4.3e-17 92.8 115 42.6
CSS0039702 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-16 91.3 110 44.5
CSS0045870 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-16 90.9 180 33.3
CSS0034941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-16 90.5 171 34.5
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-16 90.1 80 55.0
CSS0029429 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-16 89.7 111 43.2
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-14 84.0 179 34.1
Migut.C00657 Erythranthe guttata HOM05D000002 ORTHO05D000001 3.4e-14 83.2 113 37.2
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 3.4e-14 83.2 114 37.7
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 7.6e-14 82.0 135 32.6
Migut.F01590 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.6e-14 82.0 114 36.8
Migut.H01198 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.6e-14 82.0 114 36.8
Migut.J01067 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.6e-14 82.0 136 32.4
Hma1.2p1_0951F.1_g240790 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-13 81.3 142 37.3
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.3e-13 81.3 112 40.2
RcHm_v2.0_Chr7g0190501 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-13 80.9 146 32.2
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 2.2e-13 80.5 158 29.1
Migut.E01000 Erythranthe guttata HOM05D000002 ORTHO05D000001 3.8e-13 79.7 199 31.2
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-12 77.8 172 32.0
TAR650G0001 Trochodendron aralioides HOM05D000067 ORTHO05D000001 1.4e-12 77.8 177 28.8
CSS0043017 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-12 76.3 111 45.9
CANSAT21G1279 Cannabis sativa HOM05D000002 ORTHO05D000001 5.4e-12 75.9 112 33.0
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 5.4e-12 75.9 176 30.1
GSVIVG01016108001 Vitis vinifera HOM05D000002 ORTHO05D000001 5.4e-12 75.9 114 34.2
Lj2P1186T25 Lonicera japonica HOM05D000002 ORTHO05D000001 9.3e-12 75.1 58 62.1
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 9.3e-12 75.1 201 27.9
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 9.3e-12 75.1 174 30.5
CANSAT78G1493 Cannabis sativa HOM05D000002 ORTHO05D000001 1.2e-11 74.7 169 30.2
Dinv15870 Davidia involucrata HOM05D000467 ORTHO05D000379 1.2e-11 74.7 130 35.4
Dinv39044 Davidia involucrata HOM05D000016 ORTHO05D000109 1.2e-11 74.7 187 32.6
SGA_v2.0_scaffold31G12742 Striga asiatica HOM05D000073 ORTHO05D000033 1.2e-11 74.7 87 40.2
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 1.6e-11 74.3 208 26.9
Migut.E01660 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.1e-11 73.9 145 32.4
Migut.G01154 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.1e-11 73.9 161 31.7
Hma1.2p1_0718F.1_g208440 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-11 73.9 111 41.4
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 2.7e-11 73.6 174 29.9
Sabra16G0004600 Salix brachista HOM05D000002 ORTHO05D000001 3.5e-11 73.2 137 33.6
CAN.G1859.1 Capsicum annuum HOM05D001133 ORTHO05D000941 4.6e-11 72.8 109 37.6
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 6.0e-11 72.4 153 31.4
CSS0050038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.8e-11 72.0 101 36.6
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 1.0e-10 71.6 143 30.1
Sopen11g003490 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-10 71.6 172 29.1
TAR541G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.3e-10 71.2 151 32.5
PSO541G1536 Papaver somniferum HOM05D000002 ORTHO05D000001 1.7e-10 70.9 151 31.1
Peaxi162Scf00063g00071 Petunia axillaris HOM05D000002 ORTHO05D000001 1.7e-10 70.9 156 30.1
Sopen12g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-10 70.5 172 29.1
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-10 70.1 112 33.0
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-10 70.1 112 33.0
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 3.0e-10 70.1 112 35.7
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 3.0e-10 70.1 188 30.9
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 3.9e-10 69.7 177 30.5
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 3.9e-10 69.7 125 32.8
Peaxi162Scf00168g01729 Petunia axillaris HOM05D000002 ORTHO05D000001 5.1e-10 69.3 156 29.5
Sopen04g008990 Solanum pennellii HOM05D000002 ORTHO05D000001 5.1e-10 69.3 130 30.8
Sopen11g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 6.6e-10 68.9 110 30.9
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.7e-10 68.6 145 35.2
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 8.7e-10 68.6 162 28.4
Oeu039050.1 Olea europaea HOM05D000002 ORTHO05D000001 1.1e-09 68.2 167 30.5
Sopen04g009020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-09 68.2 127 30.7
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 1.5e-09 67.8 123 36.6
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-09 67.8 188 29.3
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 1.5e-09 67.8 113 33.6
Atru.chr9.1622 Acer truncatum HOM05D000002 ORTHO05D000001 1.9e-09 67.4 123 36.6
Atru.chr9.1623 Acer truncatum HOM05D000002 ORTHO05D000001 1.9e-09 67.4 123 36.6
Actinidia04430 Actinidia chinensis HOM05D000002 ORTHO05D000001 2.5e-09 67.0 142 28.9
CSS0025864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-09 67.0 112 31.2
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.5e-09 67.0 108 36.1
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-09 66.6 160 31.2
CSS0045539 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.3e-09 66.2 136 31.6
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 4.3e-09 66.2 181 28.7
Hma1.2p1_0240F.1_g100220 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-09 66.2 121 38.8
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-09 66.2 167 29.9
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 4.3e-09 66.2 141 28.4
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.6e-09 65.9 153 30.7
Hma1.2p1_1940F.1_g308370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.3e-09 65.5 188 28.2
Atru.chr2.1090 Acer truncatum HOM05D000034 ORTHO05D000001 9.6e-09 65.1 108 33.3
Hma1.2p1_0903F.1_g234920 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.6e-09 65.1 144 30.6
Lj2g0024035 Lotus japonicus HOM05D000002 ORTHO05D000001 9.6e-09 65.1 158 29.1
Peaxi162Scf00153g01013 Petunia axillaris HOM05D000002 ORTHO05D000001 9.6e-09 65.1 172 26.2
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.6e-09 65.1 176 32.4
SGA_v2.0_scaffold400G50849 Striga asiatica HOM05D000002 ORTHO05D000001 1.3e-08 64.7 113 30.1
Atru.chr11.277 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-08 64.3 172 27.3
ClCG02G008400 Citrullus lanatus HOM05D000034 ORTHO05D000001 1.6e-08 64.3 115 30.4
PSO339G3901 Papaver somniferum HOM05D000002 ORTHO05D000001 1.6e-08 64.3 134 32.1
Sabra16G0137700 Salix brachista HOM05D000002 ORTHO05D000001 1.6e-08 64.3 95 31.6
Hma1.2p1_1307F.1_g274730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-08 63.9 112 35.7
MD03G1056000 Malus domestica HOM05D000002 ORTHO05D000001 2.1e-08 63.9 145 29.7
Hma1.2p1_0948F.1_g240460 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.8e-08 63.5 112 34.8
Lalb_Chr05g0228251 Lupinus albus HOM05D008404 ORTHO05D000001 2.8e-08 63.5 155 26.5
Peaxi162Scf00203g00072 Petunia axillaris HOM05D000002 ORTHO05D000001 3.6e-08 63.2 112 30.4
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.6e-08 63.2 132 31.1
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-08 62.8 149 30.2
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-08 62.8 149 30.2
Rhsim02G0160900 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.8e-08 62.8 114 32.5
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 4.8e-08 62.8 93 36.6
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-08 62.0 140 28.6
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-07 61.6 110 31.8
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-07 61.6 151 31.1
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 1.1e-07 61.6 154 30.5
Hma1.2p1_0445F.1_g154480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.4e-07 61.2 171 28.7
Sopen08g014470 Solanum pennellii HOM05D002431 ORTHO05D000001 1.4e-07 61.2 181 29.8
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 1.8e-07 60.8 155 31.0
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-07 60.5 122 31.1
COL.COLO4_23623 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.4e-07 60.5 123 32.5
HanXRQChr10g0315391 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-07 60.5 175 29.1
HanXRQChr17g0570071 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-07 60.5 187 27.8
Sopen09g023700 Solanum pennellii HOM05D000006 ORTHO05D000001 2.4e-07 60.5 167 29.9
Atru.chr10.264 Acer truncatum HOM05D000002 ORTHO05D000001 3.1e-07 60.1 111 30.6
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 3.1e-07 60.1 143 30.8
Ciclev10013758m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.0e-07 59.7 87 37.9
Nn1g06783 Nelumbo nucifera HOM05D023713 ORTHO05D000001 4.0e-07 59.7 92 37.0
FvH4_4g05872 Fragaria vesca HOM05D000002 ORTHO05D000001 5.3e-07 59.3 127 29.1
ECA247G3681 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.9e-07 58.9 164 31.7
Gorai.013G092800 Gossypium raimondii HOM05D000002 ORTHO05D000001 6.9e-07 58.9 114 30.7
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 6.9e-07 58.9 111 31.5
Nitab4.5_0002521g0050 Nicotiana tabacum HOM05D000002 ORTHO05D000001 6.9e-07 58.9 150 28.7
Oeu019477.1 Olea europaea HOM05D000002 ORTHO05D000001 6.9e-07 58.9 167 28.7
Prupe.8G084200 Prunus persica HOM05D000002 ORTHO05D000001 6.9e-07 58.9 150 30.0
Atru.chr4.1289 Acer truncatum HOM05D000002 ORTHO05D000001 9.0e-07 58.5 177 30.5
FvH4_4g05782 Fragaria vesca HOM05D000002 ORTHO05D000001 9.0e-07 58.5 124 29.0
Nn2g11549 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.0e-07 58.5 110 31.8
Oeu053596.1 Olea europaea HOM05D000002 ORTHO05D000001 9.0e-07 58.5 144 31.2
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 9.0e-07 58.5 138 30.4
THA.LOC109115986 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.0e-07 58.5 139 32.4
TAR175G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.0e-07 58.5 138 29.7
Atru.chr2.999 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-06 58.2 90 33.3
ECA236G4365 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-06 58.2 132 28.0
HanXRQChr03g0064201 Helianthus annuus HOM05D000002 ORTHO05D000001 1.2e-06 58.2 167 29.3
Lalb_Chr06g0171641 Lupinus albus HOM05D000002 ORTHO05D000001 1.2e-06 58.2 190 23.2
Atru.chr2.3036 Acer truncatum HOM05D000002 ORTHO05D000001 1.5e-06 57.8 167 29.3
Ciclev10024253m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.5e-06 57.8 102 27.5
ECA247G0128 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-06 57.8 140 32.1
HanXRQChr07g0202651 Helianthus annuus HOM05D000002 ORTHO05D000001 1.5e-06 57.8 124 33.1
Oeu057479.1 Olea europaea HOM05D000002 ORTHO05D000001 1.5e-06 57.8 175 29.1
COL.COLO4_37640 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.0e-06 57.4 158 28.5
Hma1.2p1_1768F.1_g301510 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-06 57.4 144 30.6
Hma1.2p1_3787F.1_g337600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-06 57.4 144 30.6
ECA233G3042 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-06 57.0 114 32.5
HanXRQChr11g0320201 Helianthus annuus HOM05D000002 ORTHO05D000001 2.6e-06 57.0 109 29.4
Oeu022190.1 Olea europaea HOM05D000002 ORTHO05D000001 2.6e-06 57.0 144 30.6
Atru.chr1.2464 Acer truncatum HOM05D000002 ORTHO05D000001 3.4e-06 56.6 103 34.0
Atru.chr2.2332 Acer truncatum HOM05D000002 ORTHO05D000001 3.4e-06 56.6 100 29.0
ECA234G2692 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-06 56.6 141 27.7
ECA234G4404 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-06 56.6 116 28.4
ECA238G2091 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-06 56.6 116 29.3
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 3.4e-06 56.6 147 27.9
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 4.5e-06 56.2 139 31.7
Hma1.2p1_0840F.1_g226720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.5e-06 56.2 178 28.7
Hma1.2p1_3787F.1_g337595 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.5e-06 56.2 178 28.7
Eucgr.H00940 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.8e-06 55.8 95 31.6
HanXRQChr02g0040961 Helianthus annuus HOM05D000002 ORTHO05D000001 5.8e-06 55.8 121 33.9
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-06 55.5 165 26.7
ECA232G0091 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.6e-06 55.5 186 29.0
HanXRQChr05g0138601 Helianthus annuus HOM05D000002 ORTHO05D000001 7.6e-06 55.5 124 30.6
Hma1.2p1_0682F.1_g202600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.6e-06 55.5 163 29.4
Manes.13G013492 Manihot esculenta HOM05D000002 ORTHO05D000001 7.6e-06 55.5 102 32.4
Sopen06g023490 Solanum pennellii HOM05D000002 ORTHO05D037744 7.6e-06 55.5 184 27.2
THA.LOC104824784 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 7.6e-06 55.5 164 27.4
HanXRQChr09g0254161 Helianthus annuus HOM05D000002 ORTHO05D000001 9.9e-06 55.1 169 26.6
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.9e-06 55.1 165 29.1
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 9.9e-06 55.1 186 31.2
SHI23044 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-06 55.1 168 29.8
Sopen06g017500 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-06 55.1 120 33.3


User provided reference genes

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