Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-70 268.5 138 100.0
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.3e-66 254.6 135 95.6
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.4e-63 245.0 135 94.1
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-59 231.5 131 90.8
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-55 218.8 121 93.4
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 6.5e-54 214.2 126 90.5
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-41 171.4 112 82.1
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 5.5e-37 157.9 134 64.2
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-34 149.4 95 80.0
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 5.7e-34 147.9 131 62.6
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 7.5e-34 147.5 114 66.7
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 8.3e-33 144.1 113 69.0
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-32 143.7 98 80.6
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.1e-32 142.1 95 83.2
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.7e-31 139.0 125 60.0
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.3e-30 136.0 110 68.2
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.3e-30 136.0 109 65.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.9e-30 135.6 121 59.5
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.8e-30 135.2 107 68.2
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 3.8e-30 135.2 110 65.5
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 5.0e-30 134.8 111 64.9
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 8.6e-30 134.0 118 61.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 8.6e-30 134.0 129 57.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.9e-29 132.9 131 53.4
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.5e-29 131.3 133 54.9
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 7.2e-29 131.0 110 65.5
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 7.2e-29 131.0 118 60.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.5e-29 130.6 100 71.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 9.5e-29 130.6 110 64.5
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.2e-28 130.2 111 64.9
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.6e-28 129.8 118 59.3
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.8e-28 129.0 110 64.5
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.8e-28 129.0 126 59.5
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.8e-28 129.0 110 60.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.6e-28 128.6 113 64.6
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 3.6e-28 128.6 110 61.8
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.1e-28 127.9 126 59.5
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 8.0e-28 127.5 126 59.5
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.0e-27 127.1 127 55.1
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.0e-27 127.1 133 53.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.0e-27 127.1 134 55.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.0e-27 127.1 134 55.2
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.0e-27 127.1 134 55.2
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.8e-27 126.3 142 54.2
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.8e-27 126.3 120 57.5
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.3e-27 125.9 133 54.9
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.3e-27 125.9 126 56.3
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.0e-27 125.6 117 58.1
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 4.0e-27 125.2 126 58.7
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 5.2e-27 124.8 111 59.5
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 8.9e-27 124.0 118 55.1
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 8.9e-27 124.0 128 55.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-26 123.6 111 60.4
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.5e-26 123.2 134 50.0
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.0e-26 122.9 108 60.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.0e-26 122.9 116 60.3
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.0e-26 122.9 110 60.9
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.0e-26 122.9 130 55.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.6e-26 122.5 121 55.4
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 3.4e-26 122.1 110 60.0
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 4.4e-26 121.7 110 61.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 4.4e-26 121.7 134 49.3
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.4e-26 121.7 111 59.5
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 4.4e-26 121.7 112 60.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 7.5e-26 120.9 110 64.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.3e-25 120.2 110 53.6
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.7e-25 119.8 110 58.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.7e-25 119.8 120 55.8
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-25 119.4 111 59.5
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 3.7e-25 118.6 124 55.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 4.9e-25 118.2 112 59.8
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 8.3e-25 117.5 112 58.0
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 8.3e-25 117.5 110 63.6
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 8.3e-25 117.5 131 51.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.4e-24 116.7 112 57.1
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.4e-24 116.7 107 58.9
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 2.4e-24 115.9 101 60.4
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 5.4e-24 114.8 108 62.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.0e-23 112.8 118 58.5
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 3.5e-23 112.1 114 55.3
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 5.9e-23 111.3 111 57.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.0e-22 110.5 106 59.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.3e-22 110.2 121 52.1
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.3e-22 110.2 108 58.3
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.9e-22 109.0 105 58.1
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.9e-22 109.0 106 59.4
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.9e-21 106.3 106 57.5
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 4.3e-21 105.1 125 48.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.8e-20 102.4 104 52.9
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 6.1e-20 101.3 103 56.3
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.1e-20 101.3 104 52.9
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.0e-19 100.5 121 46.3
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.4e-19 100.1 113 50.4
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.4e-19 100.1 121 47.1
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.8e-19 99.8 106 54.7
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.8e-19 99.8 118 46.6
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 4.0e-19 98.6 113 49.6
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.2e-19 98.2 107 52.3
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.8e-19 97.8 121 46.3
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 8.9e-19 97.4 121 45.5
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 8.9e-19 97.4 121 45.5
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 8.9e-19 97.4 113 49.6
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.2e-18 97.1 106 52.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.2e-18 97.1 111 50.5
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.5e-18 96.7 106 51.9
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.0e-18 96.3 121 45.5
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.6e-18 95.9 106 52.8
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.6e-18 95.9 106 52.8
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 2.6e-18 95.9 107 54.2
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.4e-18 95.5 120 46.7
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.4e-18 95.1 115 48.7
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.4e-18 95.1 115 48.7
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 9.8e-18 94.0 121 44.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.3e-17 93.6 106 51.9
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 5.4e-16 88.2 105 51.4
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 9.2e-16 87.4 104 51.9
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.6e-15 86.7 107 49.5
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 8.6e-14 80.9 88 51.1
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 2.1e-12 76.3 50 74.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 6.2e-12 74.7 107 44.9
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-11 73.9 84 51.2
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.8e-11 73.2 98 44.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.0e-06 55.8 34 76.5
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 8.6e-06 54.3 103 35.0


User provided reference genes

Program Settings