Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-43 179.1 95 100.0
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 3.8e-37 157.9 94 86.2
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-33 144.8 96 84.4
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-32 142.5 95 83.2
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-32 142.5 95 83.2
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-32 141.7 95 84.2
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-32 141.4 103 78.6
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.1e-31 137.9 95 80.0
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-29 131.0 95 77.9
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 4.7e-19 97.8 93 60.2
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 3.0e-18 95.1 85 61.2
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 4.4e-17 91.3 88 62.5
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.2e-16 89.0 79 63.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 6.3e-16 87.4 78 62.8
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 1.1e-15 86.7 90 55.6
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.4e-15 86.3 91 51.6
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 7.0e-15 84.0 78 56.4
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 2.0e-14 82.4 81 55.6
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.0e-14 82.4 92 51.1
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 4.5e-14 81.3 75 61.3
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 5.9e-14 80.9 80 58.8
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 7.7e-14 80.5 81 54.3
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.7e-13 79.3 78 59.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.9e-13 78.6 75 54.7
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.9e-13 78.6 78 55.1
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.8e-13 78.2 79 55.7
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.8e-13 78.2 78 53.8
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 3.8e-13 78.2 79 51.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 3.8e-13 78.2 78 55.1
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 5.0e-13 77.8 81 54.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 5.0e-13 77.8 78 57.7
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.5e-13 77.4 81 49.4
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 8.6e-13 77.0 94 48.9
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.9e-12 75.9 75 58.7
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.9e-12 75.9 78 50.0
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.9e-12 75.9 71 57.7
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.9e-12 75.9 78 52.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.9e-12 75.9 76 56.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.9e-12 75.9 86 51.2
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.5e-12 75.5 78 52.6
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.5e-12 75.5 86 51.2
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 3.2e-12 75.1 80 55.0
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.2e-12 75.1 75 57.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 9.5e-12 73.6 81 51.9
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 9.5e-12 73.6 78 52.6
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.2e-11 73.2 89 53.9
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.2e-11 73.2 74 58.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.2e-11 73.2 94 47.9
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.6e-11 72.8 89 52.8
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.8e-11 72.0 79 43.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.8e-11 72.0 84 47.6
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 3.6e-11 71.6 87 46.0
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 4.7e-11 71.2 78 52.6
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 6.1e-11 70.9 79 50.6
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 8.0e-11 70.5 82 48.8
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.0e-11 70.5 78 50.0
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 8.0e-11 70.5 82 53.7
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.0e-11 70.5 82 53.7
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.0e-11 70.5 82 53.7
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.0e-10 70.1 75 56.0
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.4e-10 69.7 78 48.7
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.4e-10 69.7 74 56.8
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.8e-10 69.3 80 51.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.8e-10 69.3 81 51.9
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-10 68.9 78 50.0
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 2.3e-10 68.9 87 46.0
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 2.3e-10 68.9 77 50.6
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.3e-10 68.9 80 47.5
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.0e-10 68.6 78 48.7
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 3.0e-10 68.6 76 47.4
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 5.2e-10 67.8 84 44.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 6.8e-10 67.4 87 44.8
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 8.8e-10 67.0 74 48.6
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.2e-09 66.6 78 51.3
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 2.0e-09 65.9 78 51.3
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 2.6e-09 65.5 78 44.9
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.6e-09 65.5 82 47.6
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.4e-09 65.1 78 48.7
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.7e-09 64.3 51 70.6
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 5.7e-09 64.3 78 50.0
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.3e-08 63.2 85 43.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.2e-08 62.4 89 43.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.8e-08 62.0 78 42.3
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 3.7e-08 61.6 69 55.1
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.9e-08 61.2 89 42.7
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 6.3e-08 60.8 79 44.3
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 6.3e-08 60.8 78 47.4
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.4e-07 59.7 86 39.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.8e-07 59.3 76 47.4
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 2.4e-07 58.9 84 41.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 4.1e-07 58.2 81 42.0
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 4.1e-07 58.2 74 40.5
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.0e-07 57.4 84 40.5
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.2e-06 56.6 92 35.9
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.6e-06 56.2 72 50.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.6e-06 56.2 76 47.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.7e-06 55.5 75 44.0
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.7e-06 55.5 92 35.9
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.7e-06 55.5 86 38.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 4.5e-06 54.7 75 41.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.9e-06 54.3 88 38.6


User provided reference genes

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