Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 1.8e-30 135.2 64 100.0
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 6.1e-23 110.2 51 100.0
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 4.0e-22 107.5 51 96.1
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 4.0e-22 107.5 51 96.1
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 8.9e-22 106.3 51 96.1
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 8.9e-22 106.3 51 96.1
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 8.9e-22 106.3 51 96.1
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 8.9e-22 106.3 51 96.1
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 2.0e-21 105.1 51 94.1
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 2.0e-21 105.1 51 94.1
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.6e-21 104.8 50 96.0
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.6e-21 104.8 51 92.2
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.6e-21 104.8 51 92.2
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 3.4e-21 104.4 51 94.1
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 4.4e-21 104.0 51 92.2
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 5.7e-21 103.6 51 94.1
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 7.5e-21 103.2 51 94.1
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 7.5e-21 103.2 51 94.1
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 7.5e-21 103.2 51 94.1
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 7.5e-21 103.2 51 92.2
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 1.7e-20 102.1 51 92.2
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 1.7e-20 102.1 51 92.2
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 1.7e-20 102.1 50 92.0
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.2e-20 101.7 51 90.2
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 2.2e-20 101.7 51 92.2
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 2.9e-20 101.3 51 92.2
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 2.9e-20 101.3 51 92.2
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 2.9e-20 101.3 51 92.2
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 3.7e-20 100.9 51 90.2
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 90.2
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 88.2
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 4.9e-20 100.5 50 92.0
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 92.2
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 92.2
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 92.2
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 92.2
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 4.9e-20 100.5 51 90.2
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 6.4e-20 100.1 51 86.3
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 6.4e-20 100.1 51 88.2
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 6.4e-20 100.1 50 92.0
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 8.3e-20 99.8 51 88.2
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 8.3e-20 99.8 51 90.2
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 8.3e-20 99.8 51 90.2
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 8.3e-20 99.8 51 88.2
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 8.3e-20 99.8 51 90.2
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 8.3e-20 99.8 51 90.2
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 1.1e-19 99.4 50 90.0
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 1.1e-19 99.4 50 90.0
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 1.1e-19 99.4 50 90.0
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 1.1e-19 99.4 50 90.0
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 1.1e-19 99.4 50 90.0
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 1.1e-19 99.4 51 90.2
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 1.1e-19 99.4 51 90.2
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 1.1e-19 99.4 51 90.2
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.1e-19 99.4 51 90.2
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.4e-19 99.0 51 88.2
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 1.4e-19 99.0 50 90.0
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 1.8e-19 98.6 51 90.2
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 1.8e-19 98.6 51 88.2
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 2.4e-19 98.2 50 86.0
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 2.4e-19 98.2 51 88.2
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 3.2e-19 97.8 50 88.0
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 3.2e-19 97.8 50 88.0
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 3.2e-19 97.8 50 88.0
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 3.2e-19 97.8 51 88.2
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 3.2e-19 97.8 51 88.2
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.1e-19 97.4 51 90.2
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 4.1e-19 97.4 51 90.2
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 4.1e-19 97.4 51 88.2
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 5.4e-19 97.1 51 90.2
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 88.2
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 88.2
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 90.2
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 90.2
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 90.2
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 90.2
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 7.0e-19 96.7 51 90.2
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 7.0e-19 96.7 49 89.8
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 9.2e-19 96.3 51 86.3
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 9.2e-19 96.3 51 90.2
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 9.2e-19 96.3 51 86.3
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.2e-18 95.9 49 89.8
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 1.2e-18 95.9 49 89.8
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 1.2e-18 95.9 51 86.3
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 1.6e-18 95.5 51 84.3
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 2.7e-18 94.7 51 84.3
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 2.7e-18 94.7 51 86.3
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 3.5e-18 94.4 49 87.8
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 5.9e-18 93.6 51 84.3
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 5.9e-18 93.6 49 85.7
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 5.9e-18 93.6 49 85.7
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 7.8e-18 93.2 44 95.5
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 7.8e-18 93.2 48 89.6
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 7.8e-18 93.2 48 89.6
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 7.8e-18 93.2 48 89.6
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 1.0e-17 92.8 47 91.5
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.3e-17 92.4 51 84.3
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 1.3e-17 92.4 49 85.7
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 1.7e-17 92.0 47 87.2
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 3.9e-17 90.9 49 83.7
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 3.9e-17 90.9 49 83.7
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 3.9e-17 90.9 49 83.7
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 6.6e-17 90.1 47 87.2
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 8.6e-17 89.7 49 83.7
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 1.1e-16 89.4 51 80.4
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 2.5e-16 88.2 50 76.0
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.3e-16 87.8 51 82.4
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 3.3e-16 87.8 50 76.0
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 5.6e-16 87.0 51 80.4
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.6e-16 87.0 50 80.0
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 7.3e-16 86.7 45 88.9
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 2.8e-15 84.7 50 76.0
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 3.6e-15 84.3 50 72.0
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 8.0e-15 83.2 46 82.6
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 8.0e-15 83.2 44 86.4
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.3e-14 81.6 46 80.4
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 8.6e-09 63.2 39 69.2
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 8.6e-09 63.2 39 69.2
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 8.6e-09 63.2 39 69.2
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 5.6e-08 60.5 47 53.2
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 5.6e-08 60.5 53 56.6
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 7.3e-08 60.1 39 66.7
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 1.2e-07 59.3 47 55.3
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 1.6e-07 58.9 47 51.1
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 1.6e-07 58.9 47 55.3
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.1e-07 58.5 47 55.3
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 2.8e-07 58.2 47 53.2
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 2.8e-07 58.2 47 53.2
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 2.8e-07 58.2 47 53.2
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 2.8e-07 58.2 47 55.3
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 3.6e-07 57.8 47 55.3
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 3.6e-07 57.8 47 53.2
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 6.2e-07 57.0 53 50.9
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 6.2e-07 57.0 49 53.1
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 1.1e-06 56.2 47 51.1
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.4e-06 55.8 44 56.8
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.8e-06 55.5 49 53.1
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 2.3e-06 55.1 47 53.2
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.3e-06 55.1 46 54.3
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 8.9e-06 53.1 47 51.1


User provided reference genes

Program Settings