Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju124P4T4 Lonicera japonica HOM05D000176 ORTHO05D011435 2.6e-64 248.4 115 100.0
Lj2A866T16 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-55 219.5 115 87.8
Lj3C888T3 Lonicera japonica HOM05D000176 ORTHO05D000106 9.6e-43 176.8 114 70.2
Lj9C281T4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.8e-42 175.3 114 70.2
Lj5A683T12 Lonicera japonica HOM05D000176 ORTHO05D000106 6.2e-42 174.1 114 70.2
Lj5C240T11 Lonicera japonica HOM05D000176 ORTHO05D000106 8.1e-42 173.7 114 70.2
Lju279A7T18 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-41 172.6 114 70.2
Lj7A410T9 Lonicera japonica HOM05D000176 ORTHO05D000106 4.0e-41 171.4 114 68.4
Lj4A736T37 Lonicera japonica HOM05D000176 ORTHO05D000106 1.9e-38 162.5 114 63.2
Lj1C595G6 Lonicera japonica HOM05D000176 ORTHO05D000106 3.2e-38 161.8 111 68.5
Lj4C121T9 Lonicera japonica HOM05D000176 ORTHO05D000106 6.0e-37 157.5 114 61.4
Lj6A472T10 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-36 156.4 111 64.0
Lju1680C2T1 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-36 156.0 114 61.4
Lj9C449G12 Lonicera japonica HOM05D000176 ORTHO05D000106 3.0e-36 155.2 114 61.4
Lj6C514G1 Lonicera japonica HOM05D000176 ORTHO05D000106 5.1e-36 154.5 114 62.3
Lj3A82T20 Lonicera japonica HOM05D000176 ORTHO05D000106 1.1e-35 153.3 114 61.4
Lj9C183T0 Lonicera japonica HOM05D000176 ORTHO05D002183 2.5e-35 152.1 114 59.6
Lj5A265T32 Lonicera japonica HOM05D000176 ORTHO05D000106 5.6e-35 151.0 114 59.6
Lj3C84G3 Lonicera japonica HOM05D000176 ORTHO05D000106 4.8e-34 147.9 114 58.8
Lj3C54G11 Lonicera japonica HOM05D000176 ORTHO05D000106 8.1e-34 147.1 114 58.8
Lj2C466G13 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-33 146.4 114 57.9
Lj7C245G13 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-33 146.4 114 59.6
Lju1034C2T5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-33 146.4 114 58.8
Lj1A491T22 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-33 146.0 114 57.0
Lj5C702T0 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-33 146.0 114 57.0
Lj9C343T5 Lonicera japonica HOM05D000176 ORTHO05D000106 3.1e-33 145.2 114 57.9
Lj5A194T79 Lonicera japonica HOM05D000176 ORTHO05D000106 4.0e-33 144.8 114 57.0
Lj3A160G33 Lonicera japonica HOM05D000176 ORTHO05D000106 6.9e-33 144.1 114 56.1
Lju188C6G6 Lonicera japonica HOM05D000176 ORTHO05D000106 6.9e-33 144.1 114 57.9
Lj8C418G4 Lonicera japonica HOM05D000176 ORTHO05D000106 9.0e-33 143.7 112 57.1
Lj2C1107G22 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-32 142.9 114 56.1
Lj8C518G1 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-32 142.5 114 54.4
Lju124C17G5 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-32 141.7 110 60.9
Lj8A506T8 Lonicera japonica HOM05D000176 ORTHO05D000106 1.0e-31 140.2 105 60.0
Lj5C659T2 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-31 139.0 117 59.0
Lj1A1169T72 Lonicera japonica HOM05D000176 ORTHO05D000106 2.5e-30 135.6 111 58.6
Lj5C312G4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.7e-29 132.1 106 56.6
Lj1A172T27 Lonicera japonica HOM05D000176 ORTHO05D000106 6.0e-29 131.0 114 55.3
Lj7P460T35 Lonicera japonica HOM05D000176 ORTHO05D000106 3.0e-28 128.6 114 56.1
Lj6C562T7 Lonicera japonica HOM05D000176 ORTHO05D000106 3.9e-28 128.3 113 53.1
Lj6C734T17 Lonicera japonica HOM05D000176 ORTHO05D000106 4.1e-25 118.2 97 59.8
Lj2C845T4 Lonicera japonica HOM05D000176 ORTHO05D000106 5.3e-25 117.9 104 52.9
Lj6P836T32 Lonicera japonica HOM05D000176 ORTHO05D000106 4.5e-24 114.8 109 49.5
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 5.0e-23 111.3 114 46.5
Lju470C8G1 Lonicera japonica HOM05D000176 ORTHO05D000106 5.0e-23 111.3 82 63.4
Lju188C3T12 Lonicera japonica HOM05D000176 ORTHO05D000106 1.1e-22 110.2 110 51.8
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 1.4e-22 109.8 114 46.5
FAN24G0751 Fragaria x ananassa HOM05D000176 ORTHO05D002183 3.2e-22 108.6 114 46.5
Lj8A112T24 Lonicera japonica HOM05D000176 ORTHO05D000106 3.2e-22 108.6 110 49.1
Lj4A163G72 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-21 105.9 93 59.1
Lj9C207T4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.7e-21 105.5 110 48.2
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 2.7e-21 105.5 113 45.1
Lj2C996G10 Lonicera japonica HOM05D000176 ORTHO05D000106 6.1e-21 104.4 114 45.6
Lj8C214G5 Lonicera japonica HOM05D001508 ORTHO05D001381 1.1e-19 100.1 114 45.6
Lj2A87G47 Lonicera japonica HOM05D000176 ORTHO05D000106 4.3e-19 98.2 77 59.7
MD17G1028300 Malus domestica HOM05D000176 ORTHO05D000106 4.3e-19 98.2 111 41.4
Hma1.2p1_0690F.1_g203890 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 7.4e-19 97.4 110 43.6
Lj7C368T6 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-18 96.7 70 61.4
PSO017G5879 Papaver somniferum HOM05D000176 ORTHO05D000106 1.3e-18 96.7 112 45.5
PSO675G7692 Papaver somniferum HOM05D000176 ORTHO05D000106 2.2e-18 95.9 112 44.6
Hma1.2p1_1995F.1_g310310 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 2.8e-18 95.5 110 41.8
Lj8A631T22 Lonicera japonica HOM05D000176 ORTHO05D000106 3.7e-18 95.1 74 58.1
Lj7C349T8 Lonicera japonica HOM05D000176 ORTHO05D000106 4.8e-18 94.7 70 64.3
Hma1.2p1_0293F.1_g116320 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 6.3e-18 94.4 110 41.8
Lj3A75T5 Lonicera japonica HOM05D000176 ORTHO05D000106 6.3e-18 94.4 76 56.6
Lj7A336T29 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-17 93.2 64 68.8
Lj4A452T5 Lonicera japonica HOM05D000176 ORTHO05D000106 3.1e-17 92.0 70 57.1
Lj2A664T7 Lonicera japonica HOM05D000176 ORTHO05D002183 5.3e-17 91.3 66 62.1
Lj4P686T45 Lonicera japonica HOM05D000176 ORTHO05D000106 9.0e-17 90.5 84 51.2
Lj9C53T7 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-16 90.1 70 60.0
Hma1.2p1_0913F.1_g236030 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 2.6e-16 89.0 110 40.9
Lj2C883T0 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-16 89.0 70 58.6
Lj1C479G4 Lonicera japonica HOM05D000176 ORTHO05D000106 7.7e-16 87.4 95 45.3
CSS0007507 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.0e-15 87.0 94 45.7
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.0e-15 87.0 94 46.8
CSS0048717 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 1.0e-15 87.0 94 46.8
Lj1A54G39 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-15 86.3 114 43.0
Lj4C678T2 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-15 86.3 73 56.2
Lju158C6T6 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-15 86.3 66 62.1
Rhsim05G0108800 Rhododendron simsii HOM05D000808 ORTHO05D000863 1.7e-15 86.3 107 40.2
Lj4A312T8 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-15 85.9 65 60.0
Lj4A52T44 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-15 85.9 63 57.1
Lj4C751G10 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-15 85.5 69 62.3
TWI73G0304 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 2.9e-15 85.5 114 42.1
CSS0009167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.0e-15 84.7 94 45.7
MD06G1202700 Malus domestica HOM05D000115 ORTHO05D003511 1.1e-14 83.6 113 42.5
Rhsim05G0112400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.1e-14 83.6 107 42.1
CSS0001401 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 1.4e-14 83.2 94 44.7
Lju2561C0T1 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-14 83.2 65 58.5
Lj8C128T7 Lonicera japonica HOM05D000176 ORTHO05D000106 1.9e-14 82.8 66 62.1
Aqoxy3G01710 Aquilegia oxysepala HOM05D000176 ORTHO05D011435 2.5e-14 82.4 97 40.2
EL10Ac3g06558 Beta vulgaris HOM05D000176 ORTHO05D000106 4.2e-14 81.6 104 37.5
EL10Ac4g08649 Beta vulgaris HOM05D000176 ORTHO05D000106 4.2e-14 81.6 104 37.5
EL10Ac4g08651 Beta vulgaris HOM05D000176 ORTHO05D000106 4.2e-14 81.6 104 37.5
EL10Ac9g21153 Beta vulgaris HOM05D000176 ORTHO05D000106 5.5e-14 81.3 104 37.5
Lju99C6T5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-13 80.1 53 64.2
Aqoxy1G03413 Aquilegia oxysepala HOM05D025411 ORTHO05D000106 2.1e-13 79.3 108 36.1
Lj7A309T11 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-13 79.3 49 71.4
Rhsim05G0087700 Rhododendron simsii HOM05D011579 ORTHO05D011435 3.6e-13 78.6 94 41.5
RhsimUnG0164400 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.6e-13 78.2 94 40.4
Lj1E569T0 Lonicera japonica HOM05D000176 ORTHO05D000106 7.9e-13 77.4 70 48.6
RhsimUnG0076900 Rhododendron simsii HOM05D011579 ORTHO05D011435 7.9e-13 77.4 94 41.5
Rhsim01G0119600 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.3e-12 75.9 93 40.9
Aqoxy2G02523 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 3.0e-12 75.5 108 35.2
Hma1.2p1_0111F.1_g053640 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 6.7e-12 74.3 94 43.6
FvH4_5g13891 Fragaria vesca HOM05D000176 ORTHO05D000106 8.8e-12 73.9 113 32.7
Lj1A171T29 Lonicera japonica HOM05D000176 ORTHO05D000106 8.8e-12 73.9 59 55.9
Rhsim04G0154500 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.5e-11 73.2 94 39.4
vmacro03392 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.5e-11 73.2 108 38.9
vmacro16050 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.5e-11 73.2 108 38.9
Rhsim10G0126300 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.3e-11 71.6 109 37.6
Lj3A581T20 Lonicera japonica HOM05D000176 ORTHO05D000106 5.7e-11 71.2 45 66.7
Rhsim08G0127400 Rhododendron simsii HOM05D011579 ORTHO05D011435 5.7e-11 71.2 103 35.9
PSO675G7301 Papaver somniferum HOM05D000176 ORTHO05D000106 2.2e-10 69.3 107 29.9
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 5.3e-09 64.7 113 31.0
Lj7A594T54 Lonicera japonica HOM05D000176 ORTHO05D000106 6.9e-09 64.3 44 75.0
CSS0036407 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 9.1e-09 63.9 69 53.6
Lj7A25T29 Lonicera japonica HOM05D000176 ORTHO05D000106 9.1e-09 63.9 45 62.2
CSS0023765 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 2.0e-08 62.8 69 53.6
Migut.J01216 Erythranthe guttata HOM05D000176 ORTHO05D000106 2.0e-08 62.8 117 32.5
Rhsim09G0078700 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.0e-08 62.8 83 37.3
CSS0048540 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.4e-08 62.0 69 53.6
Lj2C590G2 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-08 62.0 57 59.6
Aqoxy6G02234 Aquilegia oxysepala HOM05D000176 ORTHO05D011435 5.9e-08 61.2 87 37.9
CSS0008763 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.0e-07 60.5 69 52.2
CSS0020110 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.0e-07 60.5 69 52.2
CSS0030884 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.0e-07 60.5 69 52.2
CSS0045734 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.0e-07 60.5 69 52.2
CSS0049005 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.0e-07 60.5 69 52.2
Lj1C830T3 Lonicera japonica HOM05D000176 ORTHO05D000106 1.0e-07 60.5 66 47.0
Lj6A53G35 Lonicera japonica HOM05D000176 ORTHO05D000106 1.0e-07 60.5 46 58.7
Lj6C556T1 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-07 59.7 106 34.9
CSS0048564 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 2.2e-07 59.3 83 42.2
Lj4C483T6 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-07 58.9 64 42.2
CSS0021615 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.8e-07 58.5 70 48.6
Lj4C621T9 Lonicera japonica HOM05D000176 ORTHO05D000106 8.5e-07 57.4 34 67.6
Ah.01g016400 Amaranthus hybridus HOM05D000176 ORTHO05D000106 1.1e-06 57.0 103 35.0
Lj4A456T44 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-06 56.6 39 61.5
TPR.G8598 Trifolium pratense HOM05D005718 ORTHO05D004853 1.4e-06 56.6 114 29.8
Ah.01g016230 Amaranthus hybridus HOM05D000176 ORTHO05D000106 1.9e-06 56.2 103 35.0
Ah.01g016330 Amaranthus hybridus HOM05D018751 ORTHO05D012560 1.9e-06 56.2 103 35.0
CSS0002224 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.9e-06 56.2 69 50.7
Ca_13581_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.5e-06 55.8 112 29.5
SGA_v2.0_scaffold280G46866 Striga asiatica HOM05D018751 ORTHO05D012560 2.5e-06 55.8 114 32.5
Migut.C00132 Erythranthe guttata HOM05D000176 ORTHO05D000106 5.5e-06 54.7 105 33.3
Ca_04586_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 7.2e-06 54.3 112 29.5
Ca_05966_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 9.4e-06 53.9 112 31.2
Hma1.2p1_0622F.1_g190860 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 9.4e-06 53.9 37 59.5


User provided reference genes

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