Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 4.0e-274 947.6 507 100.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 6.8e-133 478.4 516 57.9
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.5e-129 466.1 535 55.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 2.3e-128 463.4 514 53.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.3e-125 453.4 513 53.0
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 4.6e-121 439.1 500 49.6
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.0e-120 436.4 514 54.1
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 4.7e-118 429.1 543 51.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 8.9e-117 424.9 513 51.3
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.0e-116 423.7 464 53.9
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.6e-116 423.3 503 52.9
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 6.4e-115 418.7 519 50.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 9.2e-114 414.8 513 49.9
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.6e-113 414.1 573 47.6
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 2.1e-113 413.7 465 56.3
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 2.1e-113 413.7 515 50.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 3.5e-113 412.9 521 49.3
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.7e-112 410.6 527 53.1
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 6.6e-112 408.7 462 54.3
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 2.5e-111 406.8 519 48.9
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 4.3e-111 406.0 531 47.5
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 5.6e-111 405.6 455 54.7
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 7.3e-111 405.2 527 49.0
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 9.6e-111 404.8 509 49.3
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.2e-110 404.4 532 49.4
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.6e-110 402.9 528 51.1
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.6e-110 402.9 527 49.0
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.6e-110 402.9 506 51.4
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 4.7e-110 402.5 363 58.4
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 8.9e-109 398.3 519 48.4
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.2e-107 393.7 514 50.0
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.9e-107 393.3 462 52.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 8.4e-107 391.7 508 50.0
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 5.4e-106 389.0 507 49.3
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 7.1e-106 388.7 517 47.2
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.2e-105 387.9 526 49.8
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.5e-105 386.3 518 49.2
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 6.0e-105 385.6 527 51.4
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.0e-104 384.8 474 51.5
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-104 383.6 518 49.2
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.1e-103 381.3 542 48.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.5e-103 380.9 515 48.0
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.5e-103 380.2 515 46.8
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.3e-103 379.8 548 48.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 7.3e-103 378.6 541 46.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.6e-102 377.5 500 48.8
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 2.1e-102 377.1 525 48.4
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 2.8e-102 376.7 451 51.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.6e-102 376.3 512 47.7
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.4e-101 374.4 536 48.1
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.3e-101 372.5 507 46.7
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.5e-100 370.9 501 46.9
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.5e-100 370.9 512 46.9
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.0e-100 370.5 505 46.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.4e-100 369.8 535 44.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 4.4e-100 369.4 508 47.2
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.8e-100 369.0 501 46.9
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.2e-98 363.2 495 47.1
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.0e-96 356.7 510 46.7
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.9e-96 356.3 503 42.7
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 5.1e-96 355.9 460 50.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-95 354.8 511 48.7
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 4.3e-95 352.8 367 54.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.3e-94 351.3 350 55.4
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 4.8e-94 349.4 506 46.2
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.4e-93 347.8 506 44.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.1e-93 346.7 546 46.0
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 6.9e-93 345.5 510 43.5
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.2e-92 344.7 514 47.3
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.5e-92 344.4 503 44.3
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 5.8e-92 342.4 511 45.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.6e-92 342.0 515 47.2
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 7.6e-92 342.0 365 52.9
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 3.8e-91 339.7 520 43.8
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 4.9e-91 339.3 519 48.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 8.4e-91 338.6 383 54.0
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 8.4e-91 338.6 484 49.6
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.4e-90 337.8 369 52.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.2e-90 336.7 367 52.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 4.2e-90 336.3 366 51.6
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 5.5e-90 335.9 520 43.5
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.0e-88 331.6 534 42.5
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.5e-87 327.0 515 43.1
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 7.4e-87 325.5 358 50.6
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.1e-85 321.6 512 42.6
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 6.9e-85 318.9 542 44.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 3.4e-84 316.6 538 44.4
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 4.5e-84 316.2 447 45.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 5.8e-84 315.8 509 41.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 7.6e-84 315.5 513 41.5
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 4.9e-83 312.8 458 45.6
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.5e-83 312.4 517 42.2
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.4e-82 311.2 498 41.8
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.2e-82 310.1 481 42.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.6e-81 307.8 524 42.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.6e-81 306.2 362 50.0
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.3e-80 303.9 455 43.7
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 3.0e-80 303.5 471 47.1
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.5e-79 301.2 531 43.3
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 7.4e-79 298.9 454 43.6
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.3e-78 295.8 444 44.1
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.8e-77 294.3 453 42.6
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 2.4e-77 293.9 510 39.2
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 2.4e-77 293.9 510 39.2
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 2.4e-77 293.9 510 39.2
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 4.1e-77 293.1 425 44.0
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-76 290.8 419 43.2
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 2.0e-76 290.8 408 44.1
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 2.6e-76 290.4 305 52.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 5.9e-76 289.3 443 44.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 5.9e-76 289.3 443 44.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 5.9e-76 289.3 443 44.2
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.0e-75 288.5 422 43.8
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 2.9e-75 287.0 507 40.6
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 3.0e-72 276.9 510 40.4
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.0e-72 276.9 365 46.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.9e-71 274.2 349 47.3
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.5e-71 273.9 372 44.6
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.1e-69 268.5 472 39.6
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-69 268.1 510 39.4
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.3e-69 266.2 431 40.1
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.5e-68 264.6 518 35.1
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.6e-68 263.8 513 39.4
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.6e-68 263.8 513 39.4
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.7e-67 261.2 377 44.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.0e-67 259.6 318 48.7
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.5e-66 257.3 419 41.1
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 7.2e-66 255.8 316 47.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 7.2e-66 255.8 339 46.6
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-65 254.2 505 40.0
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.6e-65 253.1 375 43.2
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.5e-63 248.1 207 64.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.7e-62 243.4 442 37.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.8e-62 243.0 298 46.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.0e-59 233.0 348 50.3
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.2e-58 229.2 329 44.1
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.2e-48 196.4 375 36.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.3e-46 189.5 441 32.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.6e-44 184.9 396 33.6
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.6e-44 184.9 524 31.9
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.6e-44 184.9 524 31.9
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-35 154.8 185 45.4
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.9e-35 154.1 185 45.9
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.0e-31 141.4 323 30.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-31 140.2 502 27.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.7e-30 137.1 186 52.7
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.3e-30 136.3 346 28.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-28 132.1 292 34.6
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-27 129.0 295 34.6
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.8e-25 120.9 391 28.1
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.4e-24 118.6 125 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 2.0e-23 114.8 580 24.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 9.8e-23 112.5 355 27.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.0e-21 106.3 295 30.2
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.9e-20 103.2 228 31.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 8.6e-19 99.4 568 21.8
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.0e-15 88.2 169 39.1
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 3.7e-14 84.0 169 44.4
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-09 68.6 59 57.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 3.6e-09 67.4 89 42.7
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 8.9e-08 62.8 80 43.8


User provided reference genes

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