Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.2e-101 371.7 183 100.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 5.4e-56 221.5 202 61.9
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.6e-47 191.8 207 54.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 7.8e-47 191.0 178 57.3
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.7e-46 189.9 176 56.8
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 8.7e-46 187.6 190 55.8
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.5e-45 186.8 202 54.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.9e-45 186.4 206 52.4
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 9.6e-45 184.1 169 59.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.6e-44 183.3 188 55.9
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.6e-44 183.3 203 53.2
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.1e-44 183.0 201 54.2
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.8e-44 182.6 198 53.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.6e-44 182.2 203 54.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.6e-44 182.2 201 50.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.7e-44 181.8 194 56.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 8.1e-44 181.0 194 51.5
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.8e-43 179.9 189 53.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.0e-43 178.7 186 55.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.0e-43 177.6 168 58.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 9.0e-43 177.6 203 51.2
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.6e-42 176.0 205 50.2
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.4e-42 175.6 205 52.7
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 5.8e-42 174.9 209 51.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 5.8e-42 174.9 201 52.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.6e-42 174.5 198 52.5
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.3e-41 173.7 198 52.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.8e-41 172.2 178 56.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.1e-40 170.6 188 51.1
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.1e-40 170.6 170 60.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.4e-40 170.2 186 55.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.9e-40 169.9 190 55.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.4e-40 169.5 184 55.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.2e-40 168.7 204 49.0
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-40 167.9 198 52.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.2e-39 167.2 197 49.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.6e-39 166.8 177 54.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 3.5e-39 165.6 216 47.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.6e-39 165.2 200 54.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.6e-39 165.2 198 51.5
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 6.0e-39 164.9 174 53.4
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.0e-38 164.1 202 51.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.3e-38 162.9 198 51.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.1e-38 161.8 180 52.8
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.6e-38 161.4 162 59.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.6e-38 161.4 219 47.0
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 8.7e-38 161.0 181 53.0
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-37 160.6 200 50.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-37 160.6 205 50.7
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.9e-37 159.8 215 49.3
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.3e-37 159.1 215 49.8
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.3e-37 158.7 210 49.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-37 158.7 210 49.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-37 158.7 210 49.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 9.6e-37 157.5 165 54.5
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 9.6e-37 157.5 208 48.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-36 157.1 190 51.6
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-36 156.0 181 51.9
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.8e-36 156.0 179 52.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.6e-36 155.6 215 48.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.8e-36 155.2 181 51.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.2e-36 154.8 164 57.9
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.2e-36 154.8 181 51.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.2e-36 154.8 205 46.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.4e-35 153.7 193 50.8
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-35 153.3 205 48.3
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.8e-35 153.3 186 50.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.4e-35 152.9 210 47.6
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.1e-35 152.5 217 46.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.0e-35 152.1 197 44.7
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.2e-34 150.6 213 47.4
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.6e-34 147.9 186 49.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 7.6e-34 147.9 196 45.9
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 9.9e-34 147.5 185 49.2
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.9e-33 146.0 201 44.3
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.9e-33 146.0 162 50.6
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 4.9e-33 145.2 172 50.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 6.4e-33 144.8 168 51.8
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 8.4e-33 144.4 208 47.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-32 144.1 176 52.3
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.1e-32 144.1 208 46.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.9e-32 143.3 196 47.4
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.2e-32 142.1 183 46.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 5.4e-32 141.7 196 42.3
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 7.1e-32 141.4 189 47.1
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.6e-31 140.2 175 48.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.5e-31 139.0 197 43.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.6e-31 138.7 209 45.0
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 4.6e-31 138.7 204 42.2
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-30 137.1 184 50.5
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-30 137.1 184 50.5
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.9e-30 135.6 202 45.0
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.1e-29 134.0 208 45.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.5e-29 133.7 211 42.7
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.9e-29 133.3 209 41.1
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 3.3e-29 132.5 118 60.2
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.3e-29 132.1 107 60.7
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.3e-29 132.1 209 41.6
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 5.6e-29 131.7 206 42.2
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 9.6e-29 131.0 180 49.4
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.3e-28 130.6 192 45.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-28 130.2 191 44.5
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-28 130.2 207 41.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.8e-28 129.4 201 42.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.7e-28 129.0 245 39.6
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 3.7e-28 129.0 114 61.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.8e-28 128.6 204 41.7
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 4.0e-27 125.6 189 44.4
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.3e-27 125.2 193 42.5
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.9e-27 124.8 171 47.4
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 9.0e-27 124.4 171 48.5
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-26 124.0 170 46.5
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-26 124.0 170 46.5
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-26 124.0 177 44.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-26 124.0 181 44.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.5e-26 123.6 172 46.5
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-26 123.6 176 44.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.0e-26 123.2 172 47.1
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.0e-26 123.2 190 44.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.0e-26 123.2 209 40.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 7.6e-26 121.3 176 45.5
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.6e-26 121.3 171 46.8
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.6e-26 121.3 145 49.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 9.9e-26 120.9 187 43.9
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-25 120.6 186 43.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-25 120.2 173 44.5
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.2e-25 119.8 185 45.9
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.8e-25 119.0 145 49.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-25 119.0 182 42.9
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 8.4e-25 117.9 170 43.5
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 8.4e-25 117.9 185 42.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 8.4e-25 117.9 170 45.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-24 117.5 185 42.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.4e-24 117.1 187 40.6
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.4e-24 117.1 150 45.3
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.4e-24 116.3 172 43.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 7.1e-24 114.8 142 50.0
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.1e-24 114.8 187 40.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-23 114.0 162 43.8
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-23 113.2 191 40.8
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.1e-23 113.2 205 38.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.7e-23 112.8 172 41.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.7e-23 112.8 173 43.9
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.7e-23 112.8 159 44.7
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.6e-23 112.1 196 38.8
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 6.0e-23 111.7 189 41.8
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-22 110.9 183 39.3
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.0e-22 110.9 185 41.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.0e-22 109.4 204 38.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.9e-22 109.0 194 37.1
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-22 108.2 194 39.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.7e-22 108.2 194 39.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 6.7e-22 108.2 194 40.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 8.7e-22 107.8 163 43.6
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.7e-22 107.8 195 39.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.5e-21 107.1 129 50.4
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.5e-21 106.3 188 39.9
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 9.6e-21 104.4 135 45.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-20 103.6 178 43.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 4.8e-20 102.1 167 41.9
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.8e-20 102.1 172 44.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.4e-19 99.8 132 46.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-18 97.4 186 43.0
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.0e-18 96.7 167 42.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.6e-18 96.3 175 43.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.6e-18 96.3 165 42.4
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.6e-18 96.3 132 43.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.8e-18 95.1 114 50.0
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-18 94.7 165 42.4
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-17 94.0 105 52.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-17 93.6 165 41.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-17 93.2 165 41.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.2e-17 93.2 177 42.4
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-16 90.9 171 41.5
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-16 90.5 146 36.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.2e-16 89.4 118 46.6
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.6e-15 87.0 146 34.2
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.7e-15 86.3 274 32.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.7e-13 78.6 95 48.4
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.7e-12 75.9 146 37.7
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-09 67.8 101 44.6
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 3.2e-08 62.8 193 32.1
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 2.7e-07 59.7 147 36.1
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.6e-07 59.3 62 53.2
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 7.9e-07 58.2 157 36.3


User provided reference genes

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