Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 2.6e-133 479.2 332 100.0
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 1.5e-112 410.2 332 77.4
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 1.9e-112 409.8 332 85.5
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 3.4e-109 399.1 332 74.4
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 3.8e-108 395.6 332 72.3
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.1e-107 394.0 332 63.0
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 7.9e-106 387.9 331 84.3
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.3e-105 387.1 332 84.9
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 3.9e-105 385.6 332 74.1
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 6.7e-105 384.8 332 84.6
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 6.7e-105 384.8 332 78.9
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.5e-104 383.6 332 81.9
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.5e-104 383.6 332 84.3
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 3.3e-104 382.5 332 81.9
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.3e-104 382.1 332 82.2
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.2e-103 379.8 332 73.5
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 3.7e-103 379.0 332 83.7
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.4e-102 376.3 332 80.4
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 4.5e-101 372.1 332 81.6
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 4.2e-99 365.5 332 72.6
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 5.5e-99 365.2 332 72.9
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 5.5e-99 365.2 332 81.0
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.2e-98 364.0 338 79.0
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 3.6e-98 362.5 330 79.7
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 4.7e-98 362.1 332 81.3
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 7.9e-98 361.3 334 80.5
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 1.4e-97 360.5 332 80.1
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 7.4e-96 354.8 356 67.7
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 7.4e-96 354.8 333 67.6
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 9.7e-96 354.4 332 80.7
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 4.1e-94 349.0 333 78.1
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 1.7e-92 343.6 310 77.1
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 8.5e-92 341.3 339 76.1
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.2e-91 339.3 332 78.0
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 9.4e-91 337.8 332 69.3
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 9.4e-91 337.8 332 78.3
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 3.6e-90 335.9 332 77.1
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 1.4e-89 334.0 331 79.2
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 2.3e-89 333.2 331 55.3
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 3.9e-89 332.4 332 68.1
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 3.9e-89 332.4 332 76.5
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 5.2e-89 332.0 331 74.3
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 5.7e-88 328.6 352 72.7
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 1.1e-86 324.3 331 73.1
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 7.0e-86 321.6 331 66.8
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 2.0e-85 320.1 357 73.4
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 4.5e-85 318.9 332 73.8
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 6.5e-84 315.1 332 73.5
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 4.2e-83 312.4 332 72.9
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.7e-82 309.7 364 50.8
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.7e-82 309.7 364 50.8
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 3.6e-82 309.3 332 64.5
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 1.0e-81 307.8 340 73.5
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 4.0e-81 305.8 330 69.1
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 6.7e-81 305.1 332 72.0
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 4.4e-80 302.4 332 71.1
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 7.5e-80 301.6 332 67.2
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 9.7e-80 301.2 332 61.4
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 3.1e-78 296.2 332 74.1
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 4.1e-78 295.8 331 74.9
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 4.1e-78 295.8 276 73.6
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 4.1e-78 295.8 328 73.5
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 7.0e-78 295.0 328 73.8
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 7.0e-78 295.0 332 67.2
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 2.0e-77 293.5 332 73.8
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 3.5e-77 292.7 342 49.1
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 1.0e-76 291.2 332 73.5
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 8.5e-76 288.1 334 73.1
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.1e-75 287.7 310 65.5
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 1.5e-75 287.3 324 67.3
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 4.7e-74 282.3 276 72.5
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 8.8e-73 278.1 308 72.7
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 8.8e-73 278.1 274 83.6
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.2e-72 277.7 334 72.8
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.5e-72 277.3 312 51.3
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 1.3e-71 274.2 328 71.0
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 2.2e-71 273.5 336 69.9
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 3.1e-70 269.6 333 69.4
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 3.8e-68 262.7 272 79.4
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 3.8e-68 262.7 334 53.3
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.5e-67 260.8 276 76.8
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 7.2e-67 258.5 328 47.0
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.6e-66 257.3 333 70.0
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.6e-66 257.3 333 70.0
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 1.6e-61 240.7 296 70.3
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 7.8e-61 238.4 277 64.6
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 7.8e-61 238.4 289 73.0
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 5.0e-60 235.7 332 62.7
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 6.6e-60 235.3 276 66.7
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 1.1e-59 234.6 273 74.7
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 4.9e-55 219.2 276 71.4
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 6.0e-53 212.2 276 70.7
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 6.6e-52 208.8 332 55.7
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 9.5e-51 204.9 386 40.9
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 6.2e-50 202.2 297 67.0
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 6.8e-49 198.7 388 55.4
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 4.9e-47 192.6 127 74.8
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.1e-46 191.4 332 52.4
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.9e-46 190.7 398 35.4
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 1.7e-44 184.1 127 70.9
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 6.2e-42 175.6 116 74.1
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 4.9e-39 166.0 243 72.8
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 3.5e-37 159.8 332 52.1
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 3.5e-37 159.8 273 45.4
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 2.5e-35 153.7 263 66.5
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 7.3e-35 152.1 107 73.8
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 7.3e-35 152.1 107 73.8
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 1.5e-32 144.4 292 39.7
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 2.3e-28 130.6 122 56.6
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 1.1e-27 128.3 127 52.8
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 8.1e-26 122.1 86 68.6
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 4.9e-23 112.8 105 54.3
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 7.8e-21 105.5 270 28.9
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 2.6e-08 63.9 96 41.7
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 9.9e-08 62.0 110 37.3
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 6.4e-07 59.3 108 38.0
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 8.4e-07 58.9 114 36.0
Hma1.2p1_0501F.1_g167270 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 2.5e-06 57.4 99 39.4
Hma1.2p1_2488F.1_g323155 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 2.5e-06 57.4 99 39.4
MBI14_g10260_MAGBIO Magnolia biondii HOM05D002887 ORTHO05D003159 3.2e-06 57.0 110 36.4
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 7.1e-06 55.8 88 39.8
Manes.06G049300 Manihot esculenta HOM05D002887 ORTHO05D003159 7.1e-06 55.8 108 37.0
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 7.1e-06 55.8 99 39.4
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 9.3e-06 55.5 32 75.0
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 9.3e-06 55.5 112 35.7
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 9.3e-06 55.5 106 35.8


User provided reference genes

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