Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.7e-85 319.3 159 100.0
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 5.3e-76 287.7 158 87.3
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.1e-76 287.0 158 89.2
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.1e-76 287.0 158 89.2
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 86.6
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 86.6
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.1e-72 275.8 156 84.6
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.4e-71 273.1 159 83.6
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.4e-71 273.1 159 81.8
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.4e-71 273.1 159 81.8
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.8e-71 272.7 154 86.4
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.8e-71 272.7 158 84.8
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 3.0e-71 271.9 159 83.0
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 8.8e-71 270.4 158 81.6
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.2e-70 270.0 158 82.9
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.5e-70 269.6 154 84.4
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 2.0e-70 269.2 154 85.1
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.6e-70 268.9 154 83.8
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.6e-70 268.9 159 83.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.4e-70 268.5 159 80.5
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 4.4e-70 268.1 158 82.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.4e-70 268.1 158 82.9
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.4e-70 268.1 154 83.8
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 7.5e-70 267.3 154 84.4
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.5e-70 267.3 155 82.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 9.8e-70 266.9 159 81.1
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 83.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 9.8e-70 266.9 157 80.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.3e-69 266.5 154 83.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.3e-69 266.5 159 78.6
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 81.8
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.2e-69 265.8 154 81.8
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.8e-69 265.4 155 81.9
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.7e-69 265.0 155 80.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.7e-69 265.0 154 83.1
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 4.8e-69 264.6 159 80.5
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.8e-69 264.6 154 81.2
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 4.8e-69 264.6 154 81.2
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 4.8e-69 264.6 157 80.9
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 80.6
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 8.3e-69 263.8 159 80.5
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 8.3e-69 263.8 157 80.3
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.1e-68 263.5 159 79.9
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.4e-68 263.1 156 82.1
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.8e-68 262.7 155 80.6
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-68 262.7 155 81.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.4e-68 262.3 159 79.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 3.1e-68 261.9 157 79.0
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 4.1e-68 261.5 155 79.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 9.1e-68 260.4 155 80.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 9.1e-68 260.4 154 79.2
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 9.1e-68 260.4 159 78.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 9.1e-68 260.4 154 79.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.0e-67 259.2 156 80.1
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.0e-67 259.2 156 80.1
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 2.7e-67 258.8 159 78.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 5.9e-67 257.7 153 81.0
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 7.7e-67 257.3 153 80.4
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.0e-66 256.9 154 78.6
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.7e-66 256.1 155 77.4
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 2.2e-66 255.8 154 77.9
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.2e-66 255.8 154 77.3
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.8e-66 255.0 154 77.3
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 3.8e-66 255.0 153 79.7
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 77.9
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 77.9
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 6.5e-66 254.2 155 76.8
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.5e-66 253.8 140 87.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.5e-65 253.1 156 75.6
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.5e-65 252.3 151 80.8
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.5e-65 252.3 158 78.5
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 3.2e-65 251.9 154 76.6
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 3.2e-65 251.9 159 74.8
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 4.2e-65 251.5 158 76.6
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 9.4e-65 250.4 156 78.8
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 9.4e-65 250.4 156 78.8
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 9.4e-65 250.4 156 76.9
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.2e-64 250.0 155 79.4
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.2e-64 250.0 158 75.3
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 158 77.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 71.7
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-64 249.6 150 78.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-64 249.6 150 78.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-64 249.6 150 78.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 150 78.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 150 78.0
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.6e-64 249.6 150 78.0
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 2.7e-64 248.8 154 76.0
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.6e-64 248.4 159 73.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 6.1e-64 247.7 150 77.3
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 6.1e-64 247.7 155 77.4
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 8.0e-64 247.3 149 77.9
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 8.0e-64 247.3 149 77.9
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 8.0e-64 247.3 149 77.9
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.4e-63 246.5 150 76.7
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.8e-63 246.1 153 77.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.0e-63 245.4 158 73.4
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 6.8e-63 244.2 154 76.0
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.5e-62 243.0 156 75.0
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.0e-62 242.7 159 71.1
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 7.5e-62 240.7 153 74.5
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.7e-61 239.6 154 74.7
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 3.7e-61 238.4 206 60.7
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.8e-60 236.1 143 79.7
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 7.0e-60 234.2 155 72.3
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 7.7e-59 230.7 142 76.8
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.0e-58 230.3 249 52.6
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.1e-57 226.9 135 81.5
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.6e-56 223.0 156 67.9
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.0e-55 220.3 145 71.7
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-54 216.9 145 68.3
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.2e-54 216.9 155 70.3
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.5e-54 216.5 125 81.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 7.5e-54 214.2 123 83.7
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.7e-53 211.8 156 66.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 3.5e-51 205.3 208 52.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 4.3e-49 198.4 302 41.7
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 9.5e-49 197.2 191 54.5
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 6.2e-48 194.5 156 59.6
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 8.0e-48 194.1 112 78.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 6.0e-43 177.9 109 74.3
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.0e-43 177.9 142 64.1
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.1e-39 165.6 93 88.2
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 3.7e-37 158.7 111 72.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 8.3e-37 157.5 90 81.1
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 7.8e-35 151.0 133 56.4
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.1e-31 140.6 154 44.8
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.2e-31 138.3 149 48.3
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.2e-30 137.1 123 56.9
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.5e-30 136.7 149 47.7
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.4e-29 131.3 146 53.4
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 9.2e-28 127.5 77 75.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.2e-27 127.1 157 41.4
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.6e-27 126.7 132 47.7
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.9e-25 119.8 146 42.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.7e-24 115.2 96 61.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.7e-24 115.2 96 61.5
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-23 114.0 65 80.0
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.4e-23 113.6 65 78.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 4.0e-23 112.1 66 78.8
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 2.6e-22 109.4 133 43.6
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.4e-22 109.0 64 78.1
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-21 106.3 101 58.4
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.9e-21 105.1 64 75.0
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.3e-18 97.1 78 62.8
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 3.2e-12 75.9 157 33.1
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 4.3e-09 65.5 69 50.7
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.3e-08 63.9 69 49.3
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 2.0e-06 56.6 43 67.4
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 4.5e-06 55.5 144 27.8


User provided reference genes

Program Settings