Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju124A17T28 Lonicera japonica HOM05D001167 ORTHO05D001054 1.1e-37 159.5 78 100.0
Lj3C277T4 Lonicera japonica HOM05D001167 ORTHO05D001054 1.9e-10 68.9 55 60.0
Atru.chr3.1701 Acer truncatum HOM05D001167 ORTHO05D001054 1.6e-09 65.9 53 58.5
Atru.chr3.1702 Acer truncatum HOM05D001167 ORTHO05D001054 1.6e-09 65.9 53 58.5
Thhalv10016479m.g Eutrema salsugineum HOM05D001167 ORTHO05D001054 2.8e-09 65.1 53 54.7
Hma1.2p1_0412F.1_g147080 Hydrangea macrophylla HOM05D001167 ORTHO05D001054 4.7e-09 64.3 53 54.7
Hma1.2p1_0412F.1_g147090 Hydrangea macrophylla HOM05D001167 ORTHO05D001054 4.7e-09 64.3 53 54.7
Hma1.2p1_1033F.1_g250265 Hydrangea macrophylla HOM05D001167 ORTHO05D001054 4.7e-09 64.3 53 54.7
Cpa.g.sc50.134 Carica papaya HOM05D001167 ORTHO05D001054 6.2e-09 63.9 51 58.8
Potri.014G150000 Populus trichocarpa HOM05D001167 ORTHO05D001054 8.0e-09 63.5 53 54.7
Sabra14G0113400 Salix brachista HOM05D001167 ORTHO05D001054 1.0e-08 63.2 51 56.9
Sp4g25200 Schrenkiella parvula HOM05D001167 ORTHO05D001054 1.0e-08 63.2 53 54.7
Gohir.A03G088850 Gossypium hirsutum HOM05D001167 ORTHO05D001054 1.4e-08 62.8 55 54.5
AL4G41720 Arabidopsis lyrata HOM05D001167 ORTHO05D001054 1.8e-08 62.4 53 52.8
CSS0026178 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 2.3e-08 62.0 53 54.7
AT2G43070 Arabidopsis thaliana HOM05D001167 ORTHO05D001054 4.0e-08 61.2 53 52.8
Gohir.D02G114200 Gossypium hirsutum HOM05D001167 ORTHO05D001054 4.0e-08 61.2 55 52.7
Gorai.005G128500 Gossypium raimondii HOM05D001167 ORTHO05D001054 4.0e-08 61.2 55 52.7
TAR365G0261 Trochodendron aralioides HOM05D001167 ORTHO05D001054 6.8e-08 60.5 53 52.8
MSTRG.24598 Avicennia marina HOM05D001167 ORTHO05D001054 8.9e-08 60.1 53 56.6
Duzib151G1140 Durio zibethinus HOM05D001167 ORTHO05D001054 1.2e-07 59.7 53 52.8
Carub.0004s2555 Capsella rubella HOM05D001167 ORTHO05D001054 1.5e-07 59.3 53 50.9
TAR362G0098 Trochodendron aralioides HOM05D001167 ORTHO05D001054 1.5e-07 59.3 53 54.7
unitig_8.g5002 Utricularia gibba HOM05D001167 ORTHO05D001054 1.5e-07 59.3 55 50.9
BcaB06g29286 Brassica carinata HOM05D001167 ORTHO05D001054 2.0e-07 58.9 51 51.0
SGA_v2.0_scaffold290G47310 Striga asiatica HOM05D001167 ORTHO05D001054 2.0e-07 58.9 53 54.7
SHI06474 Sapria himalayana HOM05D001167 ORTHO05D001054 2.6e-07 58.5 55 52.7
COL.COLO4_10186 Corchorus olitorius HOM05D001167 ORTHO05D001054 3.4e-07 58.2 53 54.7
Oeu053848.2 Olea europaea HOM05D001167 ORTHO05D001054 4.4e-07 57.8 53 50.9
Sabra02G0177200 Salix brachista HOM05D001167 ORTHO05D001054 4.4e-07 57.8 53 52.8
Dinv22659 Davidia involucrata HOM05D001167 ORTHO05D001054 5.8e-07 57.4 53 52.8
Potri.002G232200 Populus trichocarpa HOM05D001167 ORTHO05D001054 5.8e-07 57.4 53 49.1
Thecc.04G180400 Theobroma cacao HOM05D001167 ORTHO05D001054 5.8e-07 57.4 51 52.9
TWI15G0608 Tripterygium wilfordii HOM05D001167 ORTHO05D001054 5.8e-07 57.4 53 47.2
Aa31LG1G8520 Aethionema arabicum HOM05D001167 ORTHO05D001054 7.5e-07 57.0 53 50.9
Duzib268G0364 Durio zibethinus HOM05D001167 ORTHO05D001054 7.5e-07 57.0 53 49.1
Oeu029900.3 Olea europaea HOM05D001167 ORTHO05D001054 7.5e-07 57.0 53 50.9
THA.LOC104826187 Tarenaya hassleriana HOM05D001167 ORTHO05D001054 7.5e-07 57.0 53 47.2
Aa31LG1G24840 Aethionema arabicum HOM05D001167 ORTHO05D001054 9.8e-07 56.6 53 49.1
QL10p043992 Quercus lobata HOM05D001167 ORTHO05D001054 9.8e-07 56.6 53 50.9
Sed0008886 Sechium edule HOM05D001167 ORTHO05D001054 9.8e-07 56.6 53 52.8
Thhalv10007296m.g Eutrema salsugineum HOM05D001167 ORTHO05D001054 1.3e-06 56.2 53 49.1
MD04G1030600 Malus domestica HOM05D001167 ORTHO05D001054 1.3e-06 56.2 52 50.0
Nn1g08078 Nelumbo nucifera HOM05D001167 ORTHO05D001054 1.7e-06 55.8 53 47.2
C08p02240 Brassica napus HOM05D001167 ORTHO05D001054 2.2e-06 55.5 53 49.1
BolC8t47016H Brassica oleracea HOM05D001167 ORTHO05D001054 2.2e-06 55.5 53 49.1
AT1G05820 Arabidopsis thaliana HOM05D001167 ORTHO05D001054 2.9e-06 55.1 56 41.1
BcaC02g12417 Brassica carinata HOM05D001167 ORTHO05D001054 2.9e-06 55.1 54 46.3
BolC4t22052H Brassica oleracea HOM05D001167 ORTHO05D001054 2.9e-06 55.1 54 46.3
A08p36280 Brassica napus HOM05D001167 ORTHO05D001054 3.7e-06 54.7 53 49.1
C04p04130 Brassica napus HOM05D001167 ORTHO05D001054 3.7e-06 54.7 54 46.3
MD13G1278000 Malus domestica HOM05D001167 ORTHO05D001054 3.7e-06 54.7 52 50.0
Nn3g20140 Nelumbo nucifera HOM05D001167 ORTHO05D001054 3.7e-06 54.7 53 49.1
GSVIVG01031676001 Vitis vinifera HOM05D001167 ORTHO05D001054 3.7e-06 54.7 51 51.0
A05p03560 Brassica napus HOM05D001167 ORTHO05D001054 6.4e-06 53.9 54 46.3
BraA05t19342Z Brassica rapa HOM05D001167 ORTHO05D001054 6.4e-06 53.9 54 46.3
Carub.0001s0517 Capsella rubella HOM05D001167 ORTHO05D001054 6.4e-06 53.9 53 45.3
CiPaw.02G058600 Carya illinoinensis HOM05D001167 ORTHO05D001054 6.4e-06 53.9 53 47.2
Cc03_g10520 Coffea canephora HOM05D001167 ORTHO05D001054 6.4e-06 53.9 53 47.2
DCAR_004092 Daucus carota HOM05D001167 ORTHO05D001054 6.4e-06 53.9 51 47.1
CSS0010275 Camellia sinensis var. sinensis HOM05D001167 ORTHO05D001054 8.3e-06 53.5 53 47.2
CAN.G2157.1 Capsicum annuum HOM05D001167 ORTHO05D001054 8.3e-06 53.5 51 51.0
CARHR005350 Cardamine hirsuta HOM05D001167 ORTHO05D001054 8.3e-06 53.5 53 45.3
Migut.N00438 Erythranthe guttata HOM05D001167 ORTHO05D001054 8.3e-06 53.5 48 54.2
FvH4_4g11900 Fragaria vesca HOM05D001167 ORTHO05D001054 8.3e-06 53.5 53 47.2
Sp1g04630 Schrenkiella parvula HOM05D001167 ORTHO05D001054 8.3e-06 53.5 53 45.3


User provided reference genes

Program Settings