Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.6e-40 169.1 90 100.0
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 1.5e-35 152.5 101 84.2
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 4.4e-35 151.0 85 94.1
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.5e-27 125.9 71 94.4
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 3.1e-20 101.7 65 83.1
Lju170A28T4 Lonicera japonica HOM05D016202 ORTHO05D006406 7.6e-19 97.1 74 74.3
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 4.2e-17 91.3 65 76.9
Lj1C955T6 Lonicera japonica HOM05D016202 ORTHO05D006406 5.6e-14 80.9 66 66.7
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.1e-13 79.0 73 61.6
Lju225A6T16 Lonicera japonica HOM05D016202 ORTHO05D006406 2.8e-13 78.6 45 88.9
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.2e-13 77.4 69 59.4
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 4.0e-12 74.7 64 65.6
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 6.9e-12 73.9 73 54.8
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.2e-11 73.2 73 56.2
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.5e-11 72.8 73 56.2
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.6e-11 72.0 73 56.2
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 2.6e-11 72.0 70 52.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 3.4e-11 71.6 67 56.7
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.3e-10 69.7 75 49.3
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.3e-10 69.7 75 49.3
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.3e-10 69.7 70 57.1
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.7e-10 69.3 70 51.4
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.7e-10 69.3 69 55.1
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.9e-10 68.6 68 54.4
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.9e-10 68.6 67 52.2
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.8e-10 68.2 74 47.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.8e-10 68.2 69 55.1
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 4.9e-10 67.8 68 54.4
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.1e-09 66.6 75 48.0
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-09 66.6 65 53.8
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-09 66.6 65 53.8
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.4e-09 66.2 70 51.4
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.4e-09 66.2 62 61.3
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.4e-09 66.2 66 54.5
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 4.2e-09 64.7 68 47.1
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 9.3e-09 63.5 72 45.8
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 9.3e-09 63.5 63 50.8
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.1e-08 62.4 65 50.8
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.1e-08 62.4 62 56.5
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 2.7e-08 62.0 70 48.6
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 2.7e-08 62.0 72 50.0
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 3.5e-08 61.6 70 45.7
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.6e-08 61.2 66 53.0
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.6e-08 61.2 66 48.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 4.6e-08 61.2 68 45.6
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 4.6e-08 61.2 67 53.7
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 6.0e-08 60.8 69 50.7
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 6.0e-08 60.8 71 49.3
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 7.8e-08 60.5 69 44.9
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.0e-07 60.1 66 47.0
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.0e-07 60.1 66 47.0
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.0e-07 60.1 64 51.6
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.0e-07 60.1 64 50.0
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.3e-07 59.7 66 48.5
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.3e-07 59.7 64 45.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.7e-07 59.3 70 42.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.7e-07 59.3 66 45.5
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.7e-07 59.3 60 53.3
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.3e-07 58.9 70 44.3
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.3e-07 58.9 73 42.5
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 2.3e-07 58.9 66 50.0
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 3.0e-07 58.5 70 50.0
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 3.9e-07 58.2 69 47.8
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 5.1e-07 57.8 63 49.2
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 5.1e-07 57.8 70 48.6
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 5.1e-07 57.8 73 41.1
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 5.1e-07 57.8 67 46.3
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 5.1e-07 57.8 65 49.2
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 5.1e-07 57.8 71 49.3
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 6.6e-07 57.4 66 47.0
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 8.7e-07 57.0 72 45.8
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.1e-06 56.6 69 42.0
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.5e-06 56.2 65 46.2
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.5e-06 56.2 67 46.3
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.9e-06 55.8 56 53.6
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.5e-06 55.5 65 46.2
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.5e-06 55.5 68 47.1
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.3e-06 55.1 71 43.7
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 3.3e-06 55.1 69 40.6
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 3.3e-06 55.1 75 42.7
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 4.3e-06 54.7 65 46.2
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 4.3e-06 54.7 73 50.7
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 5.6e-06 54.3 69 39.1
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 7.3e-06 53.9 66 43.9
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 7.3e-06 53.9 67 41.8
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 9.6e-06 53.5 86 37.2


User provided reference genes

Program Settings