Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 5.8e-89 330.9 169 100.0
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.6e-70 269.6 170 82.4
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 3.0e-69 265.4 167 78.4
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 2.6e-68 262.3 162 80.2
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 6.3e-67 257.7 167 77.2
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.4e-66 256.5 160 78.1
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 9.1e-66 253.8 159 79.9
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 2.6e-65 252.3 169 76.3
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 5.9e-65 251.1 165 76.4
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 1.0e-64 250.4 158 78.5
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.3e-64 250.0 162 78.4
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 2.9e-64 248.8 158 78.5
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 1.9e-63 246.1 159 77.4
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 1.4e-61 240.0 157 75.8
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 9.1e-58 227.3 153 73.2
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 2.7e-54 215.7 163 67.5
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 8.8e-53 210.7 163 65.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.0e-52 209.5 150 68.0
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 2.6e-52 209.1 165 65.5
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 9.7e-52 207.2 161 64.0
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.2e-51 206.1 167 66.5
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 3.7e-51 205.3 162 61.7
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 6.3e-51 204.5 162 67.3
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.1e-50 201.8 162 64.8
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 5.3e-50 201.4 167 58.7
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 9.1e-50 200.7 163 63.8
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.0e-49 199.5 162 64.8
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 2.7e-49 199.1 164 57.9
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 1.3e-48 196.8 162 59.9
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 2.9e-48 195.7 156 61.5
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 3.8e-48 195.3 160 62.5
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 2.5e-47 192.6 147 63.9
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 3.2e-47 192.2 149 62.4
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 5.5e-47 191.4 162 59.3
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 7.2e-47 191.0 162 62.3
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 9.4e-47 190.7 163 60.1
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 9.4e-47 190.7 163 58.9
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 2.7e-46 189.1 168 58.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 3.6e-46 188.7 152 60.5
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 4.7e-46 188.3 157 58.6
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 4.7e-46 188.3 162 58.6
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 4.7e-46 188.3 161 57.1
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 4.7e-46 188.3 163 59.5
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 8.0e-46 187.6 150 62.7
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 8.0e-46 187.6 156 57.1
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 2.3e-45 186.0 162 58.6
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 6.8e-45 184.5 168 57.1
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 8.8e-45 184.1 163 56.4
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 1.2e-44 183.7 163 54.6
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.2e-44 183.7 146 57.5
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.5e-44 183.3 150 60.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.5e-44 183.3 147 61.2
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.5e-44 183.3 165 57.0
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 2.6e-44 182.6 138 63.0
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 3.4e-44 182.2 147 60.5
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 3.4e-44 182.2 147 59.9
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 3.4e-44 182.2 156 58.3
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.4e-44 181.8 147 60.5
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 4.4e-44 181.8 161 57.8
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 7.5e-44 181.0 153 58.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 7.5e-44 181.0 147 59.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 9.8e-44 180.6 147 60.5
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 9.8e-44 180.6 156 57.1
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.3e-43 180.3 146 56.2
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.7e-43 179.9 158 58.9
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 3.7e-43 178.7 156 57.7
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 3.7e-43 178.7 156 56.4
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 4.8e-43 178.3 147 60.5
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 6.3e-43 177.9 147 58.5
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 8.3e-43 177.6 161 55.3
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 1.1e-42 177.2 149 56.4
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.1e-42 177.2 163 56.4
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.1e-42 177.2 162 56.8
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.4e-42 176.8 161 52.8
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.8e-42 176.4 161 57.1
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.8e-42 176.4 163 56.4
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.8e-42 176.4 163 50.9
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 5.4e-42 174.9 163 52.1
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 9.1e-42 174.1 162 56.8
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 2.7e-41 172.6 141 54.6
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 4.5e-41 171.8 137 58.4
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 4.5e-41 171.8 163 55.8
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.9e-41 171.4 163 55.2
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 1.0e-40 170.6 147 59.2
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 3.8e-40 168.7 146 53.4
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 5.0e-40 168.3 169 52.7
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 5.0e-40 168.3 163 51.5
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 8.6e-40 167.5 145 57.2
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 2.5e-39 166.0 148 53.4
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 7.2e-39 164.5 167 50.9
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 7.2e-39 164.5 149 54.4
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 3.6e-38 162.2 136 56.6
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 4.7e-38 161.8 144 54.2
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 1.4e-37 160.2 143 49.7
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 1.4e-37 160.2 144 52.1
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 3.0e-37 159.1 143 51.0
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 5.2e-37 158.3 150 50.7
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 2.2e-35 152.9 139 59.7
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 2.8e-35 152.5 132 51.5
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 6.3e-35 151.4 117 68.4
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 6.3e-35 151.4 131 55.7
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.4e-34 149.4 132 50.0
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.1e-34 148.7 118 65.3
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.6e-33 146.7 111 61.3
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 2.0e-33 146.4 137 50.4
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 4.5e-33 145.2 153 48.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.7e-32 143.3 148 50.0
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 6.6e-32 141.4 131 58.0
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 8.6e-32 141.0 151 50.3
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 1.9e-31 139.8 153 47.7
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 4.3e-31 138.7 141 53.2
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 2.8e-30 136.0 114 57.9
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 8.3e-27 124.4 131 47.3
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.1e-26 124.0 144 44.4
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.4e-26 123.6 134 41.0
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 1.0e-24 117.5 138 42.8
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 1.5e-23 113.6 105 53.3
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 9.5e-23 110.9 78 65.4
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 3.1e-21 105.9 92 62.0
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 8.9e-21 104.4 154 40.3
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 1.1e-18 97.4 92 56.5
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 5.4e-18 95.1 129 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 2.3e-16 89.7 159 36.5
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 1.1e-15 87.4 68 60.3
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 9.5e-15 84.3 64 60.9
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 2.1e-14 83.2 70 54.3
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 3.6e-14 82.4 135 34.1
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 8.9e-13 77.8 76 51.3
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 9.9e-12 74.3 92 51.1
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 9.2e-10 67.8 53 58.5
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 1.7e-08 63.5 41 65.9
Medtr5g087980 Medicago truncatula HOM05D000678 ORTHO05D002523 1.5e-07 60.5 81 44.4


User provided reference genes

Program Settings