Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0025361 Lotus japonicus HOM05D000085 ORTHO05D006184 7.4e-164 580.5 297 100.0
Medtr4g128180 Medicago truncatula HOM05D000085 ORTHO05D006184 2.8e-86 322.8 288 59.7
TPR.G16401 Trifolium pratense HOM05D000085 ORTHO05D006184 2.6e-84 316.2 294 59.5
Psat0s2703g0120 Pisum sativum HOM05D000085 ORTHO05D006184 7.4e-79 298.1 288 56.2
VMungo0647G1792 Vigna mungo HOM05D000085 ORTHO05D006184 1.1e-74 284.3 327 49.2
Phvul.008G204900 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 8.7e-72 274.6 341 47.8
Glyma.02G276500 Glycine max HOM05D000085 ORTHO05D006184 3.6e-57 226.1 284 49.6
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 1.2e-49 201.1 209 49.8
arahy.Tifrunner.gnm1.ann1.F9JT0R Arachis hypogaea HOM05D000085 ORTHO05D006184 1.1e-47 194.5 292 40.4
arahy.Tifrunner.gnm1.ann1.RDL00W Arachis hypogaea HOM05D000085 ORTHO05D006184 1.7e-46 190.7 292 40.1
arahy.Tifrunner.gnm1.ann1.XR6IRG Arachis hypogaea HOM05D000085 ORTHO05D015977 2.0e-44 183.7 208 49.5
Ca_13661_v3 Cicer arietinum L. HOM05D000085 ORTHO05D015977 7.7e-44 181.8 180 53.9
Ca_13663_v3 Cicer arietinum L. HOM05D000085 ORTHO05D015977 7.7e-44 181.8 180 53.9
Medtr0205s0040 Medicago truncatula HOM05D000085 ORTHO05D015977 3.8e-43 179.5 168 55.4
arahy.Tifrunner.gnm1.ann1.T5TB3S Arachis hypogaea HOM05D000085 ORTHO05D015977 1.1e-42 177.9 188 51.6
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 5.5e-42 175.6 216 49.5
Manes.01G176300 Manihot esculenta HOM05D000085 ORTHO05D006184 5.5e-42 175.6 209 50.2
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 3.0e-40 169.9 160 53.1
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 4.0e-40 169.5 162 53.7
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 6.8e-40 168.7 162 54.9
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 9.7e-39 164.9 173 50.3
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 9.7e-39 164.9 223 45.7
Actinidia01698 Actinidia chinensis HOM05D000085 ORTHO05D006184 4.8e-38 162.5 168 51.2
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 1.1e-37 161.4 163 49.1
PGR119G1958 Punica granatum HOM05D000085 ORTHO05D006184 1.4e-37 161.0 160 50.6
Lsat_1_v5_gn_2_96380 Lactuca sativa HOM05D000085 ORTHO05D006184 4.5e-36 156.0 183 44.8
Duzib168G1166 Durio zibethinus HOM05D000085 ORTHO05D006184 3.8e-35 152.9 204 46.6
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 6.5e-35 152.1 172 46.5
Thecc.09G256900 Theobroma cacao HOM05D000085 ORTHO05D006184 6.5e-35 152.1 301 37.9
FAN06G0172 Fragaria x ananassa HOM05D000085 ORTHO05D006184 7.2e-34 148.7 160 45.6
FAN06G0213 Fragaria x ananassa HOM05D000085 ORTHO05D006184 7.2e-34 148.7 160 45.6
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.6e-33 147.5 160 45.0
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 1.6e-33 147.5 300 34.3
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.1e-33 147.1 160 45.6
Cpa.g.sc33.152 Carica papaya HOM05D000085 ORTHO05D006184 6.1e-33 145.6 222 40.1
Potri.003G189850 Populus trichocarpa HOM05D000085 ORTHO05D006184 1.4e-32 144.4 157 47.1
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 2.3e-32 143.7 222 39.6
MBI19_g24735_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 4.0e-32 142.9 196 41.8
TWI38G0146 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 7.5e-31 138.7 185 45.4
Haze_02957 Corylus avellana HOM05D000085 ORTHO05D006184 1.7e-30 137.5 185 42.2
TAR633G0957 Trochodendron aralioides HOM05D000085 ORTHO05D006184 2.8e-30 136.7 139 54.0
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 3.7e-30 136.3 185 41.6
Duzib128G0691 Durio zibethinus HOM05D000085 ORTHO05D006184 3.7e-30 136.3 297 33.3
PGR031G0712 Punica granatum HOM05D000085 ORTHO05D006184 1.1e-29 134.8 185 42.2
FAN10G2237 Fragaria x ananassa HOM05D000085 ORTHO05D006184 4.1e-29 132.9 187 39.0
Sed0014409 Sechium edule HOM05D000085 ORTHO05D006184 5.4e-29 132.5 164 42.7
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 9.1e-29 131.7 197 42.1
Potri.001G035900 Populus trichocarpa HOM05D000085 ORTHO05D006184 1.2e-28 131.3 182 39.0
Gorai.011G223900 Gossypium raimondii HOM05D000085 ORTHO05D006184 3.5e-28 129.8 181 37.6
Gohir.D10G199700 Gossypium hirsutum HOM05D000085 ORTHO05D006184 7.7e-28 128.6 180 37.2
Gohir.A07G036650 Gossypium hirsutum HOM05D000085 ORTHO05D006184 1.3e-27 127.9 174 43.7
Gorai.001G043200 Gossypium raimondii HOM05D000085 ORTHO05D006184 1.3e-27 127.9 174 44.3
COL.COLO4_32861 Corchorus olitorius HOM05D000085 ORTHO05D006184 8.6e-27 125.2 172 40.1
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 8.6e-27 125.2 174 40.8
CsaV3_5G029350 Cucumis sativus L. HOM05D000085 ORTHO05D006184 8.6e-27 125.2 150 43.3
DCAR_018970 Daucus carota HOM05D000085 ORTHO05D006184 1.1e-26 124.8 203 41.4
TPR.G11965 Trifolium pratense HOM05D000085 ORTHO05D015977 1.9e-26 124.0 175 42.9
CiPaw.13G018100 Carya illinoinensis HOM05D000085 ORTHO05D006184 2.5e-26 123.6 274 32.5
Psat5g190960 Pisum sativum HOM05D000085 ORTHO05D015977 2.5e-26 123.6 121 53.7
MBI19_g24736_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 9.5e-26 121.7 173 39.9
Gohir.A10G191900 Gossypium hirsutum HOM05D000085 ORTHO05D006184 1.2e-25 121.3 192 35.9
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 8.0e-25 118.6 196 36.7
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 1.8e-24 117.5 169 35.5
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 3.0e-24 116.7 193 39.9
Dinv03741 Davidia involucrata HOM05D000085 ORTHO05D006184 3.0e-24 116.7 147 44.9
Dinv03760 Davidia involucrata HOM05D000085 ORTHO05D006184 4.0e-24 116.3 171 39.2
Duzib114G0039 Durio zibethinus HOM05D000085 ORTHO05D006184 7.5e-23 112.1 232 34.5
Lj3g0006871 Lotus japonicus HOM05D000085 ORTHO05D006184 7.5e-23 112.1 160 36.9
Hma1.2p1_1711F.1_g298710 Hydrangea macrophylla HOM05D000085 ORTHO05D006184 1.3e-22 111.3 165 44.2
Oeu013040.1 Olea europaea HOM05D000085 ORTHO05D006184 1.7e-22 110.9 175 37.1
PGSC0003DMG400003294 Solanum tuberosum HOM05D000085 ORTHO05D006184 1.7e-22 110.9 196 33.7
Lsat_1_v5_gn_7_31301 Lactuca sativa HOM05D000085 ORTHO05D006184 2.2e-22 110.5 188 37.2
Sed0020592 Sechium edule HOM05D000085 ORTHO05D006184 2.2e-22 110.5 196 36.2
Solyc01g096690.3 Solanum lycopersicum HOM05D000085 ORTHO05D006184 2.2e-22 110.5 204 33.8
Prupe.2G050000 Prunus persica HOM05D000085 ORTHO05D006184 2.8e-22 110.2 113 45.1
Ca_24049_v3 Cicer arietinum L. HOM05D000085 ORTHO05D006184 1.4e-21 107.8 277 31.4
Nitab4.5_0004168g0020 Nicotiana tabacum HOM05D000085 ORTHO05D006184 1.8e-21 107.5 267 30.3
Medtr3g011730 Medicago truncatula HOM05D000085 ORTHO05D006184 2.4e-21 107.1 208 32.2
ECA236G4574 Erigeron canadensis HOM05D000085 ORTHO05D006184 3.2e-21 106.7 187 34.2
Glyma.04G126000 Glycine max HOM05D000085 ORTHO05D006184 3.2e-21 106.7 159 37.1
Glyma.06G312600 Glycine max HOM05D000085 ORTHO05D006184 7.0e-21 105.5 159 36.5
Nitab4.5_0007610g0030 Nicotiana tabacum HOM05D000085 ORTHO05D006184 1.2e-20 104.8 206 35.4
VMungo1080G0919 Vigna mungo HOM05D000085 ORTHO05D006184 2.7e-20 103.6 178 36.5
Phvul.005G013200 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 5.9e-20 102.4 159 38.4
TPR.G30402 Trifolium pratense HOM05D000085 ORTHO05D006184 1.3e-19 101.3 181 29.8
QL01p020611 Quercus lobata HOM05D000085 ORTHO05D006184 1.7e-19 100.9 105 54.3
TPR.G16382 Trifolium pratense HOM05D000085 ORTHO05D006184 8.6e-19 98.6 161 39.1
Lj1A1080T28 Lonicera japonica HOM05D000085 ORTHO05D006184 1.1e-18 98.2 188 30.9
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.1e-18 98.2 248 27.4
Phvul.006G019900 Phaseolus vulgaris HOM05D000085 ORTHO05D015977 5.6e-18 95.9 180 36.7
PGR044G1040 Punica granatum HOM05D000085 ORTHO05D006184 2.8e-17 93.6 160 34.4
VMungo1127G0217 Vigna mungo HOM05D000085 ORTHO05D006184 2.8e-17 93.6 160 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 4.7e-17 92.8 194 33.0
Cpa.g.sc34.209 Carica papaya HOM05D000085 ORTHO05D006184 4.7e-17 92.8 170 38.8
SEGI_07503 Sequoiadendron giganteum HOM05D008363 ORTHO05D006184 8.0e-17 92.0 198 32.3
Glyma.13G187600 Glycine max HOM05D000085 ORTHO05D006184 3.1e-16 90.1 278 27.7
Glyma.13G187700 Glycine max HOM05D000085 ORTHO05D006184 4.0e-16 89.7 156 36.5
Phvul.011G191900 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 4.0e-16 89.7 173 33.5
MD02G1269800 Malus domestica HOM05D000085 ORTHO05D006184 5.2e-16 89.4 157 35.0
QL01p020653 Quercus lobata HOM05D000085 ORTHO05D006184 5.2e-16 89.4 106 50.9
RcHm_v2.0_Chr1g0329671 Rosa chinensis HOM05D000085 ORTHO05D006184 5.2e-16 89.4 160 33.8
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 8.9e-16 88.6 156 28.8
Peaxi162Scf00220g00239 Petunia axillaris HOM05D000085 ORTHO05D006184 7.5e-15 85.5 132 37.9
arahy.Tifrunner.gnm1.ann1.VTKH3T Arachis hypogaea HOM05D000085 ORTHO05D006184 1.1e-13 81.6 157 32.5
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.1e-13 81.6 171 30.4
QL01p020601 Quercus lobata HOM05D000085 ORTHO05D006184 1.1e-13 81.6 125 39.2
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 2.4e-13 80.5 176 27.3
FAN08G3178 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.4e-13 80.5 255 24.3
FAN18G0517 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.0e-12 77.4 195 29.2
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.5e-12 76.6 158 25.9
AagrBONN_evm.TU.Sc2ySwM_117.1415 Anthoceros agrestis HOM05D016224 ORTHO05D010508 4.6e-12 76.3 160 31.2
Phvul.009G133000 Phaseolus vulgaris HOM05D000085 ORTHO05D009791 6.0e-12 75.9 200 28.0
Sopen01g040400 Solanum pennellii HOM05D000504 ORTHO05D000403 7.8e-12 75.5 98 40.8
Glyma.06G120400 Glycine max HOM05D000085 ORTHO05D009791 1.0e-11 75.1 142 30.3
TWI63G1738 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 1.7e-11 74.3 97 42.3
VMungo1309G2437 Vigna mungo HOM05D000085 ORTHO05D009791 1.7e-11 74.3 142 30.3
Potri.005G185500 Populus trichocarpa HOM05D000085 ORTHO05D009791 3.9e-11 73.2 272 23.5
Actinidia29501 Actinidia chinensis HOM05D000085 ORTHO05D009791 5.0e-11 72.8 151 29.8
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 6.6e-11 72.4 242 24.0
Cpa.g.sc26.71 Carica papaya HOM05D000085 ORTHO05D009791 8.6e-11 72.0 181 27.6
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 8.6e-11 72.0 149 30.9
TPR.G6314 Trifolium pratense HOM05D000085 ORTHO05D009791 1.5e-10 71.2 147 25.9
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 1.9e-10 70.9 159 28.3
Cfa018397 Carpinus fangiana HOM05D000085 ORTHO05D009791 2.5e-10 70.5 144 27.1
FvH4_7g04460 Fragaria vesca HOM05D000085 ORTHO05D006184 2.5e-10 70.5 61 50.8
Lj1g0014811 Lotus japonicus HOM05D000085 ORTHO05D009791 2.5e-10 70.5 142 28.2
DCAR_020608 Daucus carota HOM05D000085 ORTHO05D006184 3.3e-10 70.1 223 25.6
MBI19_g24364_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 3.3e-10 70.1 94 40.4
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 3.3e-10 70.1 156 28.8
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 3.3e-10 70.1 158 22.8
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 3.3e-10 70.1 182 28.6
AagrBONN_evm.TU.Sc2ySwM_117.1414 Anthoceros agrestis HOM05D016224 ORTHO05D010508 5.6e-10 69.3 147 29.3
Manes.02G172500 Manihot esculenta HOM05D000085 ORTHO05D009791 7.3e-10 68.9 161 27.3
Psat5g226720 Pisum sativum HOM05D000085 ORTHO05D006184 7.3e-10 68.9 213 25.8
Actinidia03435 Actinidia chinensis HOM05D000085 ORTHO05D009791 1.2e-09 68.2 130 30.8
arahy.Tifrunner.gnm1.ann1.NCK985 Arachis hypogaea HOM05D000085 ORTHO05D009791 1.2e-09 68.2 147 23.8
CsaV3_6G031170 Cucumis sativus L. HOM05D000085 ORTHO05D009791 1.2e-09 68.2 174 25.3
Psat5g083480 Pisum sativum HOM05D000085 ORTHO05D009791 2.1e-09 67.4 147 25.9
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 2.1e-09 67.4 179 27.4
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 2.8e-09 67.0 152 22.4
Prupe.8G012300 Prunus persica HOM05D008363 ORTHO05D009791 4.7e-09 66.2 192 27.1
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 6.2e-09 65.9 93 38.7
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 6.2e-09 65.9 151 26.5
Manes.18G084900 Manihot esculenta HOM05D000085 ORTHO05D009791 6.2e-09 65.9 191 28.3
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 8.0e-09 65.5 153 26.8
Pp3c7_3140 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.1e-08 65.1 172 29.7
Peaxi162Scf00066g01519 Petunia axillaris HOM05D000085 ORTHO05D009791 1.4e-08 64.7 135 26.7
Ciclev10003429m.g Citrus clementina HOM05D000085 ORTHO05D009791 1.8e-08 64.3 189 25.4
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 1.8e-08 64.3 151 25.2
Zm00001eb145720 Zea mays HOM05D000085 ORTHO05D009791 1.8e-08 64.3 190 21.6
Medtr3g088855 Medicago truncatula HOM05D000085 ORTHO05D009791 2.3e-08 63.9 147 23.8
Thecc.08G138000 Theobroma cacao HOM05D000085 ORTHO05D009791 2.3e-08 63.9 151 25.8
FvH4_2g15260 Fragaria vesca HOM05D000085 ORTHO05D009791 4.0e-08 63.2 222 24.8
FAN15G3404 Fragaria x ananassa HOM05D000085 ORTHO05D009791 4.0e-08 63.2 222 24.8
Glyma.13G036300 Glycine max HOM05D000085 ORTHO05D009791 4.0e-08 63.2 155 26.5
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 5.2e-08 62.8 204 24.5
Solyc04g063370.3 Solanum lycopersicum HOM05D000085 ORTHO05D009791 6.8e-08 62.4 156 23.7
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 8.9e-08 62.0 164 26.8
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 8.9e-08 62.0 189 26.5
DCAR_031504 Daucus carota HOM05D000085 ORTHO05D009791 1.2e-07 61.6 163 24.5
Sopen04g026290 Solanum pennellii HOM05D000085 ORTHO05D009791 1.2e-07 61.6 169 22.5
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 1.2e-07 61.6 152 26.3
FAN27G0973 Fragaria x ananassa HOM05D000085 ORTHO05D009791 1.5e-07 61.2 285 23.9
Pp3c11_18470 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.5e-07 61.2 172 27.3
arahy.Tifrunner.gnm1.ann1.8T63F8 Arachis hypogaea HOM05D000085 ORTHO05D009791 2.0e-07 60.8 147 23.1
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 2.0e-07 60.8 231 22.9
Atru.chr13.1646 Acer truncatum HOM05D000085 ORTHO05D009791 4.4e-07 59.7 135 26.7
Aqoxy7G04067_Aqoxy7G04068 Aquilegia oxysepala HOM05D000085 ORTHO05D001756 7.5e-07 58.9 199 28.1
Duzib093G0943 Durio zibethinus HOM05D000085 ORTHO05D009791 7.5e-07 58.9 184 23.4
SalBow6G4001 Salvia bowleyana HOM05D000085 ORTHO05D009791 7.5e-07 58.9 152 23.7
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 9.8e-07 58.5 182 25.3
SalBow6G6367 Salvia bowleyana HOM05D000085 ORTHO05D006184 9.8e-07 58.5 105 34.3
Mapoly0095s0067 Marchantia polymorpha HOM05D008363 ORTHO05D010508 1.3e-06 58.2 162 25.9
Aqoxy6G00345 Aquilegia oxysepala HOM05D000085 ORTHO05D009791 2.2e-06 57.4 155 22.6
CAN.G46.6 Capsicum annuum HOM05D000085 ORTHO05D009791 3.7e-06 56.6 239 20.5
Gorai.005G084800 Gossypium raimondii HOM05D000085 ORTHO05D009791 3.7e-06 56.6 164 26.2
MD05G1010000 Malus domestica HOM05D000085 ORTHO05D009791 3.7e-06 56.6 186 26.9
VMungo0464G0657 Vigna mungo HOM05D000085 ORTHO05D001756 4.9e-06 56.2 169 26.6
ECA232G1372 Erigeron canadensis HOM05D000085 ORTHO05D001756 6.4e-06 55.8 148 26.4
HanXRQChr09g0276391 Helianthus annuus HOM05D000085 ORTHO05D001756 6.4e-06 55.8 151 24.5
CANSAT56G3617 Cannabis sativa HOM05D000085 ORTHO05D001756 8.3e-06 55.5 179 24.6
SEGI_03372 Sequoiadendron giganteum HOM05D000085 ORTHO05D006184 8.3e-06 55.5 59 44.1


User provided reference genes

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