Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 3458.7 1824 100.0
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2992.2 1801 86.2
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2975.3 1802 86.0
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2965.6 1801 85.0
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2934.8 1802 85.0
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2924.8 1801 84.5
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2899.8 1802 84.3
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2895.1 1802 83.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2891.3 1802 83.1
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2822.7 1781 83.2
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2607.8 1808 74.8
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2553.9 1861 72.1
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2545.0 1808 73.2
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2507.6 1808 72.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2492.2 1809 71.8
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2491.1 1807 71.4
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2478.4 1805 71.1
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2478.0 1806 70.7
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2473.4 1809 70.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2467.2 1809 70.3
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2460.3 1805 70.9
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2458.7 1808 71.0
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2450.2 1808 69.8
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2449.1 1805 70.1
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2443.7 1806 70.3
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2436.0 1825 69.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2430.2 1825 69.6
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2418.7 1805 69.5
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2416.3 1808 69.7
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2409.4 1808 69.7
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2401.3 1806 69.6
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2380.5 1810 69.2
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2380.1 1811 68.7
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2379.0 1807 67.7
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2367.8 1830 68.2
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2367.0 1824 68.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2365.5 1797 68.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2362.8 1808 66.8
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2361.3 1808 68.1
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2355.5 1808 66.6
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2343.9 1804 66.9
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2336.6 1808 68.0
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2335.1 1806 67.4
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2329.7 1810 67.8
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2328.9 1807 66.8
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2324.7 1813 66.3
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2324.3 1809 66.1
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2297.7 1839 65.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2296.2 1804 65.6
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2295.0 1807 66.0
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2293.1 1820 66.4
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2280.4 1806 65.3
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2275.7 1808 65.1
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2270.0 2353 54.4
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2261.1 1809 65.3
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2257.3 1803 65.6
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2244.5 1812 64.7
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2242.2 1798 64.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2239.5 1798 64.6
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2239.2 1799 64.9
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2231.4 1798 64.2
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2229.1 1797 64.6
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2224.5 1805 64.7
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2214.5 1811 64.2
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2213.7 1807 64.3
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2206.0 1807 63.6
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2201.4 1978 59.8
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2190.6 1805 63.9
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2187.9 1835 62.8
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2184.5 1815 63.5
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2181.0 1815 63.0
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2159.4 1815 63.1
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2154.0 1824 62.7
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2146.3 1880 61.0
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2142.9 1792 62.3
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2011.5 1474 70.9
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2004.9 1804 57.6
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1963.3 1499 67.4
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1937.2 1391 72.1
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1840.5 1348 69.1
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1816.2 1328 70.3
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1812.0 1389 68.0
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1781.9 1298 71.2
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1748.8 1347 69.0
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1647.1 1860 48.7
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1629.8 1338 64.6
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1607.0 1864 47.0
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1585.9 1220 68.0
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1575.8 1813 49.7
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1540.8 1867 46.4
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1470.7 1153 65.7
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1427.5 1639 47.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1418.7 1086 67.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1317.8 1348 56.5
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1280.0 1110 59.3
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1169.8 1049 58.2
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1120.1 903 62.8
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.3e-287 994.2 1578 37.4
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-278 964.5 886 56.1
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 1.6e-256 891.0 599 77.8
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 9.9e-251 871.7 1729 34.3
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 6.2e-237 825.9 1730 33.7
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 3.8e-234 816.6 634 67.4
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 9.1e-220 768.8 796 52.3
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 6.1e-208 729.6 496 74.0
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 8.5e-202 709.1 448 83.5
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-190 672.2 450 78.2
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 7.0e-172 609.8 445 70.3
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.0e-170 603.6 661 50.8
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.1e-164 585.9 2026 26.9
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 6.6e-154 550.1 314 86.9
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 4.3e-153 547.4 449 67.7
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-150 539.3 506 56.7
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.4e-142 510.8 347 71.8
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 2.6e-118 431.8 823 35.1
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 2.6e-118 431.8 358 65.6
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 3.6e-107 394.8 1516 24.1
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 7.2e-92 344.0 281 64.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 4.7e-91 341.3 282 64.5
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.2e-88 332.4 284 62.7
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.5e-76 291.2 161 87.0
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 8.0e-67 260.8 182 77.5
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.0e-67 260.8 270 54.1
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 6.8e-66 257.7 182 76.4
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.3e-64 253.4 185 69.7
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.2e-59 234.6 339 40.1
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.1e-58 232.3 345 43.5
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.4e-55 223.4 129 86.0
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.7e-53 216.5 212 53.8
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 3.4e-49 202.2 169 63.9
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.1e-46 193.0 147 68.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.1e-46 193.0 144 72.2
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 5.1e-45 188.3 195 52.8
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 8.6e-45 187.6 333 41.4
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 6.8e-42 177.9 167 62.9
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 5.8e-41 174.9 135 69.6
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 2.2e-40 172.9 214 43.9
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 2.1e-35 156.4 175 54.9
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 3.6e-35 155.6 282 38.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.9e-32 145.2 258 36.0
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 3.5e-30 139.0 88 76.1
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 3.9e-29 135.6 141 53.9
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 8.7e-29 134.4 170 43.5
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.3e-27 130.6 73 84.9
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 7.6e-25 121.3 73 84.9
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 4.2e-23 115.5 77 72.7
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.5e-20 106.3 149 44.3
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 9.6e-20 104.4 92 57.6
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 9.6e-20 104.4 157 40.1
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 3.1e-18 99.4 92 58.7
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.0e-18 99.0 202 30.2
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 5.3e-18 98.6 164 36.0
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.0e-18 97.8 84 51.2
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 6.0e-14 85.1 55 70.9
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 5.1e-13 82.0 66 54.5
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.1e-12 80.9 71 64.8
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 5.6e-12 78.6 115 39.1
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 7.4e-12 78.2 78 57.7
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 2.0e-09 70.1 51 74.5
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.4e-09 69.3 111 39.6
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 5.8e-09 68.6 60 51.7
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.2e-07 62.4 38 76.3


User provided reference genes

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