Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-55 217.6 108 100.0
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-55 217.6 108 100.0
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.3e-54 216.1 108 99.1
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.3e-54 216.1 108 99.1
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 6.9e-51 203.8 109 93.6
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 9.0e-51 203.4 109 93.6
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.2e-50 203.0 109 93.6
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 2.0e-50 202.2 108 92.6
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 3.4e-50 201.4 108 92.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 7.6e-50 200.3 108 90.7
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.8e-49 198.0 103 91.3
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.8e-49 198.0 108 89.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.9e-49 197.6 108 90.7
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.9e-48 195.7 104 90.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 3.2e-48 194.9 103 90.3
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 3.2e-48 194.9 103 90.3
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 3.2e-48 194.9 103 90.3
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 3.2e-48 194.9 103 90.3
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 4.2e-48 194.5 104 91.3
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 7.1e-48 193.7 104 89.4
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 9.3e-48 193.4 104 91.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.2e-47 193.0 106 90.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 87.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.6e-47 192.6 104 90.4
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 6.0e-47 190.7 106 87.7
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.0e-47 190.7 101 92.1
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.9e-47 190.3 104 88.5
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.9e-47 190.3 104 88.5
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.0e-46 189.9 106 86.8
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 2.3e-46 188.7 103 88.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.3e-46 188.7 104 87.5
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 3.0e-46 188.3 104 86.5
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.0e-46 188.3 104 86.5
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.0e-46 188.3 104 86.5
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.9e-46 188.0 103 91.3
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 85.8
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 84.9
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 5.1e-46 187.6 106 85.8
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.1e-46 187.6 106 85.8
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.1e-46 187.6 106 85.8
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.1e-46 187.6 106 85.8
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 5.1e-46 187.6 106 85.8
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.1e-46 187.6 98 93.9
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 6.7e-46 187.2 107 86.9
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 6.7e-46 187.2 104 89.4
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 8.7e-46 186.8 103 89.3
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 8.7e-46 186.8 103 90.3
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.1e-45 186.4 98 90.8
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.5e-45 186.0 106 86.8
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.5e-45 186.0 101 90.1
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 3.3e-45 184.9 101 88.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 84.9
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 3.3e-45 184.9 103 87.4
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.3e-45 184.9 104 87.5
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 4.3e-45 184.5 106 84.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 5.6e-45 184.1 104 87.5
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 7.4e-45 183.7 106 85.8
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.3e-44 183.0 100 85.0
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.6e-44 182.6 104 87.5
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.6e-44 182.6 106 84.9
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.1e-44 182.2 101 86.1
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 2.1e-44 182.2 107 81.3
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.8e-44 181.8 100 84.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.8e-44 181.8 104 86.5
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 3.7e-44 181.4 104 85.6
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.8e-44 181.0 107 81.3
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 6.2e-44 180.6 107 80.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 8.2e-44 180.3 104 84.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-43 179.9 100 85.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.1e-43 179.9 104 85.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.1e-43 179.9 107 79.4
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.1e-43 179.9 107 79.4
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 100 85.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 107 80.4
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.8e-43 179.1 98 86.7
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 2.4e-43 178.7 104 83.7
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.4e-43 178.7 99 87.9
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 4.0e-43 177.9 100 85.0
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 4.0e-43 177.9 104 83.7
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 4.0e-43 177.9 104 85.6
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 5.3e-43 177.6 99 84.8
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 6.9e-43 177.2 104 81.7
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 9.0e-43 176.8 107 77.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 9.0e-43 176.8 99 87.9
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.5e-42 176.0 104 82.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.5e-42 176.0 98 85.7
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.5e-42 176.0 98 85.7
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.5e-42 176.0 103 80.6
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 2.0e-42 175.6 107 78.5
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.6e-42 175.3 107 78.5
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.6e-42 175.3 102 81.4
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 3.4e-42 174.9 103 79.6
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.0e-41 173.3 104 82.7
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 85.7
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 81.7
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 106 77.4
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 81.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.9e-41 171.0 95 90.5
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 6.5e-41 170.6 99 82.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.1e-40 169.9 104 80.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.9e-40 169.1 98 80.6
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 3.2e-40 168.3 98 84.7
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.2e-39 166.4 104 78.8
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.1e-39 165.6 104 76.9
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 7.9e-39 163.7 104 77.9
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-38 162.5 99 79.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 8.7e-38 160.2 104 76.0
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.1e-37 159.8 102 76.5
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.7e-37 157.5 104 74.0
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.3e-36 156.4 102 76.5
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.3e-36 156.4 87 87.4
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.8e-36 155.2 104 72.1
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.4e-35 152.9 103 72.8
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 5.9e-34 147.5 108 65.7
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 5.9e-34 147.5 105 72.4
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.6e-34 147.1 104 74.0
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 67.0
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.7e-33 146.0 104 65.4
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 2.2e-33 145.6 103 67.0
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 2.2e-33 145.6 102 66.7
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 6.5e-33 144.1 103 66.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 6.5e-33 144.1 106 65.1
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-32 142.9 105 64.8
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-32 142.9 106 65.1
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.4e-32 142.9 106 65.1
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.9e-32 142.5 106 64.2
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.9e-32 142.5 99 69.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 64.2
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 9.3e-32 140.2 107 59.8
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.1e-31 139.0 102 65.7
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.6e-31 138.3 98 66.3
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 64.5
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 64.5
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 64.5
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 64.5
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 4.6e-31 137.9 98 65.3
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.8e-30 136.0 98 65.3
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.1e-29 133.3 91 76.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.9e-29 132.5 66 93.9
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.1e-27 125.2 65 90.8
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 6.9e-27 124.0 98 59.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 5.9e-26 120.9 81 70.4
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.9e-24 115.9 75 80.0
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 7.2e-24 114.0 96 60.4
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.6e-23 112.8 96 60.4
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.6e-23 112.8 93 60.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.6e-23 111.7 88 63.6
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.9e-23 110.5 97 59.8
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 5.1e-22 107.8 87 60.9
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.6e-21 105.5 88 59.1
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.3e-20 103.2 56 89.3
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 2.8e-20 102.1 56 83.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.4e-19 99.0 79 65.8
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.0e-17 93.6 89 53.9
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.4e-16 89.7 56 75.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.2e-16 88.6 48 91.7
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 4.2e-16 88.2 106 49.1
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 5.5e-16 87.8 48 85.4
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.3e-12 76.6 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 5.0e-09 64.7 40 80.0
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 8.5e-09 63.9 89 41.6


User provided reference genes

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