Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.7e-115 419.5 232 100.0
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.0e-108 396.0 232 93.1
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.2e-107 392.5 232 90.1
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 5.0e-107 391.3 232 90.1
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 8.5e-107 390.6 234 89.7
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 4.7e-105 384.8 230 87.8
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.4e-104 383.3 234 88.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 1.4e-104 383.3 232 87.5
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 2.3e-104 382.5 233 88.8
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 6.8e-104 380.9 234 88.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 6.8e-104 380.9 233 88.4
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 8.8e-104 380.6 232 87.1
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.2e-103 380.2 232 87.1
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 2.6e-103 379.0 232 88.8
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.6e-103 379.0 232 86.2
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.6e-103 379.0 232 86.2
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 2.6e-103 379.0 232 89.2
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 2.6e-103 379.0 232 86.6
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 3.4e-103 378.6 230 88.7
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 4.4e-103 378.3 232 86.6
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 4.4e-103 378.3 232 87.1
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 4.4e-103 378.3 234 87.6
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 4.4e-103 378.3 225 90.2
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 4.4e-103 378.3 232 86.6
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 4.4e-103 378.3 229 86.5
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 9.8e-103 377.1 232 85.3
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.7e-102 376.3 230 87.4
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.2e-102 375.9 228 87.3
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 2.2e-102 375.9 232 86.2
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.2e-102 375.9 228 90.4
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 2.8e-102 375.6 231 86.1
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 2.8e-102 375.6 232 87.1
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.8e-102 375.6 231 86.6
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 3.7e-102 375.2 232 87.5
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 4.8e-102 374.8 232 87.1
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 8.3e-102 374.0 232 87.9
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 1.1e-101 373.6 232 85.3
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.4e-101 373.2 231 85.7
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.8e-101 372.9 229 89.1
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 2.4e-101 372.5 229 86.0
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.4e-101 372.5 232 87.9
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.1e-101 371.7 232 85.3
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 4.1e-101 371.7 235 86.4
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 5.4e-101 371.3 233 88.4
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 5.4e-101 371.3 227 86.8
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 7.0e-101 370.9 232 85.3
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.0e-101 370.9 232 84.9
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 7.0e-101 370.9 232 85.3
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 7.0e-101 370.9 232 87.9
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 7.0e-101 370.9 231 85.3
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 7.0e-101 370.9 231 85.3
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.2e-100 370.2 232 87.9
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.2e-100 370.2 226 86.3
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.6e-100 369.8 226 87.6
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.6e-100 369.8 232 85.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.7e-100 369.0 229 84.7
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 2.7e-100 369.0 232 86.6
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.5e-100 368.2 231 85.7
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 7.7e-100 367.5 232 85.3
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 7.7e-100 367.5 228 84.2
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.0e-99 367.1 229 86.0
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.0e-99 367.1 230 86.1
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.3e-99 366.7 232 87.5
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.3e-99 366.7 232 84.1
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 1.7e-99 366.3 228 83.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.3e-99 365.9 232 84.9
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 2.9e-99 365.5 232 85.3
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 5.0e-99 364.8 232 82.3
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 5.0e-99 364.8 228 85.1
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.9e-98 362.8 232 84.1
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.9e-98 362.8 232 86.6
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.5e-98 362.5 232 83.6
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.2e-98 362.1 232 83.6
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 3.2e-98 362.1 230 87.4
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.2e-98 361.7 232 84.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.5e-98 361.3 232 83.2
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 7.2e-98 360.9 205 89.3
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 9.5e-98 360.5 232 83.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 9.5e-98 360.5 232 82.8
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 9.5e-98 360.5 232 83.2
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.2e-97 360.1 232 84.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.2e-97 360.1 206 91.3
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 1.6e-97 359.8 233 83.7
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.6e-97 359.8 232 82.8
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.6e-97 359.8 232 81.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.1e-97 359.4 232 83.2
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.8e-97 359.0 226 86.7
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.8e-97 359.0 223 85.7
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.8e-97 359.0 232 83.2
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 3.6e-97 358.6 229 80.8
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 4.7e-97 358.2 228 82.9
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 6.1e-97 357.8 228 84.6
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 6.1e-97 357.8 232 82.3
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.4e-96 356.7 232 83.2
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.4e-96 356.7 230 82.6
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.8e-96 356.3 232 82.3
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.8e-96 356.3 232 83.2
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.8e-96 356.3 232 83.2
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.8e-96 356.3 232 83.2
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.3e-96 355.9 206 91.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.3e-96 355.9 259 75.7
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 4.0e-96 355.1 232 82.8
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.5e-95 353.2 229 80.3
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 2.0e-95 352.8 227 79.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 2.6e-95 352.4 206 88.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.6e-95 352.4 232 81.9
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 7.5e-95 350.9 232 79.3
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 9.8e-95 350.5 232 81.0
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.2e-94 349.4 206 87.4
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.4e-93 345.9 230 79.1
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 2.9e-91 339.0 226 81.4
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 4.3e-90 335.1 301 64.5
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 5.2e-88 328.2 233 77.3
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.6e-87 325.9 192 89.1
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 5.9e-84 314.7 203 80.3
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 2.5e-82 309.3 208 76.9
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 2.8e-81 305.8 217 72.8
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 3.5e-76 288.9 194 86.1
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.3e-75 286.2 182 86.8
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.1e-74 283.9 195 80.5
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 6.2e-73 278.1 222 69.4
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.1e-72 277.3 158 93.0
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.3e-72 276.2 158 92.4
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 6.8e-72 274.6 158 90.5
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.8e-72 274.6 161 89.4
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-71 270.8 186 77.4
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 1.1e-69 267.3 154 90.3
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 3.2e-69 265.8 165 85.5
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 2.7e-68 262.7 180 78.3
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 7.3e-66 254.6 162 84.6
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.6e-65 252.3 185 73.0
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 2.7e-60 236.1 160 78.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.8e-54 215.7 124 90.3
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 4.6e-52 208.8 159 73.6
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.5e-42 177.2 110 87.3
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.7e-41 172.6 103 89.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 2.4e-37 159.8 92 93.5
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.3e-34 149.1 158 55.1
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.8e-33 145.6 88 88.6
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 6.5e-30 135.2 79 83.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.4e-24 117.5 206 37.9
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.3e-22 110.9 118 64.4
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.4e-21 107.5 57 89.5
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 9.7e-18 94.7 66 72.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.4e-15 86.3 66 68.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 2.2e-14 83.6 65 64.6
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 4.4e-10 69.3 44 77.3


User provided reference genes

Program Settings