Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 0.0e+00 1139.4 585 100.0
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.6e-247 858.2 592 76.2
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.3e-240 835.1 591 74.6
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 4.5e-237 824.7 588 74.0
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 4.5e-237 824.7 573 74.3
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 7.1e-235 817.4 592 71.1
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 9.3e-235 817.0 573 74.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.3e-231 806.6 587 71.6
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.4e-230 803.1 584 71.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 3.3e-224 781.9 596 69.0
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.9e-220 768.8 592 67.7
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.9e-219 766.1 627 65.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.2e-219 765.4 584 67.3
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.6e-218 761.9 581 68.0
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.1e-217 758.1 599 66.8
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.1e-216 756.9 593 66.4
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.1e-216 756.9 577 67.9
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.3e-215 753.4 599 65.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.8e-215 752.3 590 67.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 5.9e-213 744.6 599 65.1
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.4e-209 733.4 599 65.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.8e-207 725.7 607 63.9
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.4e-206 723.4 583 64.5
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 6.9e-206 721.1 598 63.5
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.4e-205 718.8 588 64.5
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 7.7e-205 717.6 598 63.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.2e-204 716.1 592 63.5
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.9e-204 715.7 598 62.9
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.5e-203 712.6 624 62.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.2e-203 712.2 602 62.0
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 7.2e-203 711.1 598 62.7
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.1e-202 709.5 592 62.8
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.3e-201 706.1 598 62.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.3e-200 702.2 592 62.8
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 4.4e-200 701.8 518 68.1
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.3e-199 700.3 587 63.4
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.8e-199 699.1 598 60.9
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.1e-198 697.2 592 62.3
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.2e-197 693.7 592 62.3
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.5e-197 692.2 517 67.9
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.2e-196 689.5 584 61.1
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.8e-196 688.7 601 61.6
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.1e-195 687.2 593 62.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.2e-195 685.6 575 61.9
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 7.2e-195 684.5 591 61.4
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.3e-193 679.5 581 61.8
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.7e-193 677.9 580 60.5
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.6e-192 676.0 590 61.2
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 7.5e-192 674.5 604 60.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.7e-191 673.3 596 59.6
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 6.3e-191 671.4 602 60.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-190 670.6 537 63.7
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 5.3e-190 668.3 577 60.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 2.0e-189 666.4 576 60.2
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.5e-189 665.2 579 59.6
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 4.5e-189 665.2 580 61.2
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.5e-189 665.2 579 59.9
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 5.9e-189 664.8 576 60.2
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 7.7e-189 664.5 584 59.6
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.0e-188 664.1 579 59.8
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.8e-188 662.1 584 59.4
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 5.0e-188 661.8 578 60.9
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.1e-187 660.6 600 59.5
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.5e-187 659.4 595 58.0
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.2e-187 659.1 595 57.6
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 3.2e-187 659.1 516 64.5
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 7.2e-187 657.9 607 60.1
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 7.2e-187 657.9 778 49.0
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 9.4e-187 657.5 601 59.2
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 9.4e-187 657.5 587 58.9
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.6e-186 656.8 542 62.5
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.7e-186 656.0 609 57.5
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.7e-186 656.0 575 59.5
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.7e-186 655.2 578 58.3
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.4e-184 649.0 541 61.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 3.4e-184 649.0 657 56.0
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 5.7e-184 648.3 592 57.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.7e-183 646.7 583 59.0
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.4e-182 643.7 588 57.7
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.4e-182 642.9 589 57.6
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 4.1e-182 642.1 540 61.7
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.0e-181 639.8 527 61.1
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.9e-180 636.0 567 59.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.7e-173 612.8 578 56.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.3e-171 605.9 579 56.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.0e-169 599.4 544 58.6
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.5e-168 597.0 516 60.7
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.3e-167 594.0 489 60.9
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.7e-167 593.6 607 56.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.5e-163 579.7 503 59.8
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.8e-160 567.8 600 53.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.6e-157 560.5 576 54.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.0e-156 557.8 574 52.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.9e-147 526.9 469 62.0
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 4.3e-147 525.8 527 51.6
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.1e-145 519.6 356 72.5
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.1e-129 468.0 612 45.4
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.7e-116 421.8 448 50.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.6e-114 417.5 557 45.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 2.0e-112 410.6 503 45.5
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.0e-111 408.3 548 43.2
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.2e-111 407.1 304 65.8
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.8e-108 397.5 558 43.5
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 6.7e-108 395.6 376 56.1
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 5.9e-104 382.5 328 60.7
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.8e-82 310.5 216 75.5
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.5e-78 298.1 216 69.9
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.8e-76 289.3 404 44.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.7e-69 266.5 262 55.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.0e-68 265.4 585 32.1
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.3e-66 256.1 302 44.7
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 7.0e-65 252.7 359 38.4
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.0e-63 248.8 181 71.3
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.9e-62 244.6 295 50.2
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.0e-47 193.4 190 55.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.1e-41 173.7 123 65.0
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 9.9e-35 152.5 112 62.5
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.4e-34 149.8 125 63.2
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.5e-30 137.9 252 36.5
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.2e-27 129.0 103 66.0
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.6e-22 110.2 112 53.6
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 9.6e-22 109.4 216 33.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.6e-22 109.4 144 40.3
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.8e-20 105.1 566 21.6
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.5e-19 102.1 98 48.0
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.4e-19 100.9 140 42.9
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.8e-19 100.1 74 66.2
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.9e-18 97.1 77 64.9
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 6.4e-18 96.7 82 62.2
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.4e-18 96.3 129 44.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.9e-17 95.1 80 62.5
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-17 94.4 85 50.6
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 6.6e-15 86.7 220 30.9
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 9.0e-12 76.3 58 67.2
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 1.2e-11 75.9 62 67.7
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.6e-11 74.7 106 37.7
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 4.5e-11 73.9 475 24.4
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-09 67.8 62 45.2
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 4.2e-09 67.4 54 51.9
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.4e-09 67.0 325 22.5
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 9.3e-09 66.2 138 33.3
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 9.6e-06 56.2 35 71.4


User provided reference genes

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