Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 2.8e-58 228.4 115 100.0
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 1.6e-45 186.0 115 83.5
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 1.7e-44 182.6 115 81.7
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 3.3e-43 178.3 117 79.5
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 6.2e-42 174.1 118 75.4
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 1.1e-41 173.3 119 76.5
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 5.3e-41 171.0 118 72.9
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 1.5e-40 169.5 121 73.6
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 2.4e-38 162.2 116 74.1
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.2e-38 161.4 118 73.7
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 1.2e-37 159.8 118 72.9
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 6.0e-37 157.5 132 64.4
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 7.9e-37 157.1 118 72.0
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 3.7e-34 148.3 116 66.4
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 9.0e-33 143.7 116 66.4
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 9.0e-33 143.7 116 66.4
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 1.5e-32 142.9 114 64.0
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 3.4e-32 141.7 116 65.5
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 4.5e-32 141.4 116 62.9
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 1.3e-31 139.8 115 62.6
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 1.7e-31 139.4 115 63.5
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 6.5e-31 137.5 116 62.9
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 6.5e-31 137.5 116 62.9
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 8.4e-31 137.1 116 62.1
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 1.4e-30 136.3 115 63.5
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 7.1e-30 134.0 115 60.9
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 1.6e-29 132.9 114 59.6
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 1.6e-29 132.9 113 58.4
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 3.5e-29 131.7 113 56.6
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 4.6e-29 131.3 114 58.8
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 4.6e-29 131.3 113 56.6
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 1.3e-28 129.8 114 59.6
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 3.9e-28 128.3 117 53.8
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 6.7e-28 127.5 114 59.6
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 8.7e-28 127.1 119 58.8
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 1.9e-27 125.9 114 60.5
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 1.9e-27 125.9 114 60.5
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 3.3e-27 125.2 114 59.6
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 5.7e-27 124.4 115 58.3
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 7.4e-27 124.0 117 57.3
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 9.6e-27 123.6 121 56.2
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 1.8e-25 119.4 118 55.9
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 4.1e-25 118.2 114 51.8
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 4.1e-25 118.2 113 54.9
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 5.3e-25 117.9 115 56.5
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 6.9e-25 117.5 114 54.4
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 9.0e-25 117.1 112 55.4
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 2.0e-24 115.9 103 59.2
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 2.6e-24 115.5 115 53.0
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 3.4e-24 115.2 116 52.6
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 3.4e-24 115.2 114 55.3
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 3.4e-24 115.2 117 56.4
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 4.5e-24 114.8 93 59.1
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 5.9e-24 114.4 113 55.8
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 1.0e-23 113.6 113 54.0
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 1.0e-23 113.6 113 54.9
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 1.7e-23 112.8 117 54.7
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 2.2e-23 112.5 115 53.0
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 3.8e-23 111.7 108 54.6
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 3.8e-23 111.7 115 53.0
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 5.0e-23 111.3 114 51.8
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 1.4e-22 109.8 120 52.5
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 1.9e-22 109.4 120 54.2
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 1.9e-22 109.4 114 55.3
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 1.9e-22 109.4 112 52.7
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 3.2e-22 108.6 115 53.0
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 3.2e-22 108.6 111 53.2
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 9.3e-22 107.1 118 51.7
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 9.3e-22 107.1 114 49.1
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 9.3e-22 107.1 99 54.5
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 2.1e-21 105.9 98 60.2
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 2.7e-21 105.5 117 53.8
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.0e-20 103.6 130 46.2
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 1.3e-20 103.2 110 48.2
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.3e-20 103.2 118 52.5
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.3e-20 103.2 118 52.5
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 3.9e-20 101.7 77 64.9
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 8.7e-20 100.5 114 52.6
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 1.1e-19 100.1 113 47.8
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 1.9e-19 99.4 99 54.5
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 2.5e-19 99.0 114 49.1
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 3.3e-19 98.6 114 48.2
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 5.7e-19 97.8 117 47.0
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 7.4e-19 97.4 73 65.8
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 9.7e-19 97.1 116 50.0
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 1.6e-18 96.3 117 46.2
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 2.2e-18 95.9 116 50.9
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 3.1e-17 92.0 120 46.7
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 1.5e-16 89.7 113 46.9
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 3.4e-16 88.6 113 45.1
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 1.3e-15 86.7 131 42.0
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 2.9e-15 85.5 116 47.4
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 1.1e-14 83.6 115 45.2
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 9.4e-14 80.5 83 51.8
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 1.6e-13 79.7 200 31.5
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 2.1e-13 79.3 90 46.7
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 2.7e-13 79.0 95 47.4
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 2.7e-13 79.0 99 48.5
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 3.0e-12 75.5 90 45.6
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 3.9e-12 75.1 77 50.6
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.3e-10 70.1 57 61.4
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 1.3e-10 70.1 51 62.7
Pp3c24_4990 Physcomitrium patens HOM05D007094 ORTHO05D008264 2.8e-10 68.9 124 33.9
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 1.1e-09 67.0 64 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 1.4e-09 66.6 131 35.9
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 1.8e-09 66.2 110 41.8
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 9.1e-09 63.9 83 38.6
SalBow6G5897 Salvia bowleyana HOM05D007094 ORTHO05D008264 2.0e-08 62.8 54 57.4
Haze_25678 Corylus avellana HOM05D007094 ORTHO05D008264 2.6e-08 62.4 115 38.3
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 4.5e-08 61.6 50 58.0
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 3.8e-07 58.5 83 36.1
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 1.1e-06 57.0 119 30.3
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 1.1e-06 57.0 78 35.9
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 4.2e-06 55.1 78 34.6
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 4.2e-06 55.1 78 34.6
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 7.2e-06 54.3 79 34.2


User provided reference genes

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