Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 1.3e-70 269.6 140 100.0
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 1.7e-57 226.1 140 86.4
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 3.2e-56 221.9 140 83.6
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 1.0e-54 216.9 140 82.9
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 1.9e-53 212.6 142 81.0
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 6.2e-52 207.6 140 79.3
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 2.7e-47 192.2 140 67.1
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 9.6e-45 183.7 136 74.3
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 3.6e-44 181.8 134 73.1
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 1.4e-43 179.9 127 73.2
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 2.4e-43 179.1 137 73.0
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 5.2e-43 177.9 137 71.5
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 3.4e-42 175.3 102 79.4
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 8.4e-41 170.6 137 58.4
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 3.2e-40 168.7 138 68.8
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 3.2e-40 168.7 127 70.9
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 3.2e-40 168.7 137 69.3
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 3.2e-40 168.7 132 58.3
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 5.4e-40 167.9 135 68.9
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 7.1e-40 167.5 132 70.5
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 1.2e-39 166.8 140 65.7
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 1.2e-39 166.8 137 71.5
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 7.8e-39 164.1 135 66.7
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 1.7e-38 162.9 114 67.5
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 1.1e-37 160.2 135 59.3
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 1.9e-37 159.5 133 59.4
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 4.3e-37 158.3 107 65.4
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 7.3e-37 157.5 147 53.1
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 9.6e-37 157.1 106 66.0
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 3.6e-36 155.2 105 64.8
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 6.2e-36 154.5 134 56.0
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 1.1e-35 153.7 132 64.4
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 1.4e-35 153.3 133 56.4
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 1.8e-35 152.9 137 58.4
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 1.8e-35 152.9 126 65.1
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 1.8e-35 152.9 105 64.8
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 5.3e-35 151.4 117 73.5
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 5.3e-35 151.4 93 79.6
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 6.9e-35 151.0 126 64.3
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 1.2e-34 150.2 133 54.1
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 1.2e-34 150.2 119 64.7
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 5.8e-34 147.9 121 57.0
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 1.3e-33 146.7 117 66.7
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 2.2e-33 146.0 139 63.3
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 4.9e-33 144.8 101 72.3
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 6.4e-33 144.4 110 60.9
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 1.4e-32 143.3 137 54.7
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 1.9e-32 142.9 127 53.5
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 4.2e-32 141.7 135 50.4
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 1.2e-31 140.2 120 56.7
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 2.7e-31 139.0 105 59.0
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 6.0e-31 137.9 128 53.1
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 1.9e-29 132.9 110 66.4
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 5.6e-29 131.3 166 45.2
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 2.8e-28 129.0 95 72.6
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 2.8e-28 129.0 135 50.4
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 1.4e-27 126.7 99 70.7
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 1.4e-27 126.7 135 49.6
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 1.8e-27 126.3 96 74.0
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 6.9e-27 124.4 80 71.2
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 5.8e-26 121.3 102 67.6
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 3.8e-25 118.6 167 44.3
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 8.4e-25 117.5 100 66.0
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 8.4e-25 117.5 95 64.2
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 1.1e-24 117.1 103 62.1
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 2.4e-24 115.9 103 61.2
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 7.1e-24 114.4 107 58.9
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 3.0e-22 109.0 69 68.1
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 2.5e-21 105.9 112 53.6
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 3.3e-21 105.5 73 64.4
Sp3g15800 Schrenkiella parvula HOM05D007737 ORTHO05D009754 9.6e-21 104.0 115 52.2
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.3e-20 103.6 123 52.0
AL3G30770 Arabidopsis lyrata HOM05D007737 ORTHO05D009754 1.6e-20 103.2 112 53.6
Prupe.2G111200 Prunus persica HOM05D007737 ORTHO05D009754 1.6e-20 103.2 102 59.8
Thhalv10021734m.g Eutrema salsugineum HOM05D007737 ORTHO05D009754 3.7e-20 102.1 127 49.6
BraA01t03730Z Brassica rapa HOM05D007737 ORTHO05D009754 1.1e-19 100.5 112 50.0
unitig_22.g5837 Utricularia gibba HOM05D007737 ORTHO05D009754 1.4e-19 100.1 81 72.8
AT3G17668 Arabidopsis thaliana HOM05D007737 ORTHO05D009754 4.0e-19 98.6 112 52.7
CARHR093000 Cardamine hirsuta HOM05D007737 ORTHO05D009754 4.0e-19 98.6 101 57.4
BcaB04g20827 Brassica carinata HOM05D001802 ORTHO05D001788 6.9e-19 97.8 112 53.6
C01p46550 Brassica napus HOM05D007737 ORTHO05D009754 9.0e-19 97.4 112 50.0
BcaC09g48726 Brassica carinata HOM05D001802 ORTHO05D001788 1.5e-18 96.7 112 50.0
FAN06G2876 Fragaria x ananassa HOM05D007737 ORTHO05D009754 2.0e-18 96.3 75 57.3
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 3.4e-18 95.5 84 65.5
Pp3c8_23020 Physcomitrium patens HOM05D007737 ORTHO05D009754 2.5e-16 89.4 84 61.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 9.3e-16 87.4 105 39.0
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 1.0e-14 84.0 94 39.4
vmacro13551 Vaccinium macrocarpon HOM05D007737 ORTHO05D009754 3.3e-13 79.0 176 33.5
MELO3C022466.2 Cucumis melo HOM05D007737 ORTHO05D009754 5.3e-11 71.6 127 37.8
HPP92_007269 Vanilla planifolia HOM05D007737 ORTHO05D009754 3.4e-10 68.9 66 50.0
Aqoxy3G02490 Aquilegia oxysepala HOM05D007737 ORTHO05D009754 4.5e-10 68.6 93 50.5
A01p36650 Brassica napus HOM05D007737 ORTHO05D009754 3.9e-06 55.5 64 42.2


User provided reference genes

Program Settings