Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 6.6e-208 727.2 396 100.0
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 5.4e-162 574.7 403 79.9
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.0e-160 570.5 402 77.1
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 3.9e-160 568.5 395 80.3
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 6.9e-157 557.8 397 78.1
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.4e-156 555.4 404 79.0
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.2e-154 548.5 395 80.5
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.2e-153 547.0 401 80.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 3.5e-153 545.4 339 84.1
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 3.5e-153 545.4 411 77.1
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 7.9e-153 544.3 399 80.2
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 9.7e-143 510.8 421 72.7
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 5.3e-141 505.0 453 66.9
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.9e-122 443.4 327 70.6
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.6e-121 439.1 328 68.9
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 4.7e-121 438.7 326 70.6
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 6.1e-121 438.3 327 70.3
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 3.9e-120 435.6 395 65.6
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 2.0e-119 433.3 332 69.3
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 2.6e-119 433.0 330 69.7
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.6e-119 433.0 327 69.7
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 3.3e-119 432.6 343 68.2
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 4.4e-119 432.2 416 59.1
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 9.7e-119 431.0 390 62.8
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.3e-118 430.6 327 69.1
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.7e-118 430.3 319 69.3
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.2e-116 424.1 331 67.1
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.0e-116 423.3 316 68.7
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.0e-116 423.3 346 65.6
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 7.7e-116 421.4 389 63.8
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.7e-115 420.2 323 70.0
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.2e-115 419.9 331 68.0
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.1e-114 417.5 331 65.9
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 4.2e-114 415.6 339 64.9
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 9.4e-114 414.5 320 66.2
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-113 414.1 335 65.7
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 3.6e-113 412.5 324 66.4
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.8e-112 410.2 335 67.2
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 6.7e-112 408.3 333 65.2
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 8.8e-112 407.9 346 63.0
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.2e-111 407.5 330 65.8
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.5e-111 407.1 327 65.4
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.3e-111 406.0 332 65.1
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 4.4e-111 405.6 322 68.3
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 7.5e-111 404.8 394 59.4
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 2.2e-110 403.3 392 61.2
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 6.3e-110 401.7 424 55.2
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 1.4e-109 400.6 362 59.7
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.8e-109 400.2 333 64.9
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 4.1e-109 399.1 350 62.0
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 5.3e-109 398.7 400 56.2
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 7.0e-109 398.3 333 64.0
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 2.7e-108 396.4 335 62.4
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 4.5e-108 395.6 327 65.4
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 5.9e-108 395.2 330 63.3
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 7.7e-108 394.8 325 63.7
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.7e-107 393.7 323 63.5
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.7e-107 393.7 354 62.4
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.7e-107 393.7 406 59.9
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.1e-106 391.0 326 63.2
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.5e-106 390.6 336 61.6
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.9e-106 390.2 330 61.5
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 4.2e-106 389.0 325 63.7
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 2.7e-105 386.3 326 61.3
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 2.7e-105 386.3 326 61.3
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 2.7e-105 386.3 415 58.1
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.6e-105 386.0 331 61.3
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 6.1e-105 385.2 329 61.4
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.0e-105 384.8 412 57.3
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.0e-104 384.4 412 57.5
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.3e-104 383.3 336 61.3
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 2.3e-104 383.3 344 61.9
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 3.0e-104 382.9 336 61.0
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 5.2e-104 382.1 328 61.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 5.2e-104 382.1 385 55.6
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.5e-103 380.6 334 61.1
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.4e-103 379.0 331 61.3
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 4.4e-103 379.0 354 59.0
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 5.7e-103 378.6 319 65.8
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 5.7e-103 378.6 319 66.1
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 7.5e-103 378.3 312 62.8
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-102 377.5 403 55.8
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 2.8e-102 376.3 440 52.0
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.8e-102 375.6 301 64.1
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 4.8e-102 375.6 427 55.3
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 6.3e-102 375.2 327 61.8
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.1e-101 374.4 358 57.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.8e-101 373.6 333 60.7
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.8e-101 373.6 290 67.9
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 5.4e-101 372.1 290 67.6
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 9.1e-101 371.3 334 60.2
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 2.0e-100 370.2 342 58.8
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 5.9e-100 368.6 404 52.2
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 7.7e-100 368.2 330 61.5
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 6.1e-97 358.6 293 63.1
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 6.8e-96 355.1 309 62.8
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.2e-95 354.4 332 58.4
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.5e-95 354.0 286 65.4
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 9.8e-95 351.3 331 55.9
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 9.2e-93 344.7 408 52.0
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.3e-91 340.9 311 59.8
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.7e-91 340.5 341 56.9
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.6e-91 338.2 522 46.2
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 1.6e-89 334.0 322 57.8
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.1e-89 333.6 288 63.2
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 7.0e-85 318.5 298 56.7
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.6e-84 317.4 298 57.7
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 2.0e-84 317.0 354 51.4
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 9.5e-82 308.1 309 55.7
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 6.8e-80 302.0 313 54.3
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 8.1e-73 278.5 288 56.9
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.1e-68 263.8 227 63.4
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 5.6e-66 255.8 226 61.1
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 3.9e-59 233.0 401 37.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 6.6e-59 232.3 215 59.1
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.4e-53 214.5 331 39.9
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.1e-52 210.7 312 44.6
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-47 194.9 176 63.1
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.8e-46 189.9 138 71.0
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 5.1e-43 179.5 241 48.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 2.6e-39 167.2 112 76.8
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.7e-38 164.5 158 57.6
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 6.5e-38 162.5 160 55.6
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.2e-37 159.8 115 68.7
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.3e-37 158.7 222 51.4
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 4.6e-36 156.4 387 31.5
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 4.6e-36 156.4 285 38.6
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 2.8e-33 147.1 338 31.7
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 8.4e-30 135.6 211 45.0
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 6.1e-28 129.4 98 65.3
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 5.3e-24 116.3 204 40.2
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 7.7e-23 112.5 94 61.7
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.3e-22 111.7 69 82.6
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-21 107.5 167 40.1
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.2e-20 105.1 135 51.1
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.6e-20 104.8 63 85.7
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 2.1e-20 104.4 135 48.1
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.0e-19 100.5 61 78.7
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 8.8e-19 99.0 99 56.6
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.5e-18 98.2 81 61.7
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.3e-17 95.1 160 37.5
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 2.8e-17 94.0 63 71.4
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 8.2e-17 92.4 61 75.4
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.5e-15 88.2 63 66.7
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 7.7e-15 85.9 68 70.6
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.0e-14 85.5 91 56.0
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-14 85.1 68 64.7
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 6.5e-14 82.8 108 44.4
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 9.4e-13 79.0 395 24.8
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 3.7e-09 67.0 36 88.9
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 4.1e-08 63.5 110 40.9
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 9.1e-08 62.4 149 30.9
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.3e-06 58.5 429 23.5
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 3.8e-06 57.0 60 50.0
SEGI_13080 Sequoiadendron giganteum HOM05D026866 ORTHO05D005197 5.0e-06 56.6 60 56.7


User provided reference genes

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