Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 2.3e-210 735.3 370 100.0
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 8.6e-194 680.2 360 95.8
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 6.0e-179 630.9 356 91.9
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 3.4e-158 562.0 353 79.0
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.4e-156 556.6 352 78.7
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.5e-150 536.6 352 75.9
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.2e-123 447.2 305 72.5
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 5.2e-114 415.2 305 69.2
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.4e-113 411.4 301 70.1
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 7.0e-111 404.8 301 69.4
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-96 357.1 179 97.8
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 8.3e-96 354.8 308 59.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 3.1e-95 352.8 305 61.0
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 3.1e-95 352.8 305 61.0
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 3.5e-94 349.4 308 58.8
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.5e-94 349.4 301 61.5
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 6.8e-90 335.1 300 60.0
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.2e-88 330.1 300 58.3
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 4.9e-88 328.9 301 56.8
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.8e-87 327.0 300 57.7
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.4e-87 326.6 305 57.7
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.7e-86 323.2 301 57.1
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 4.6e-86 322.4 301 58.8
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.1e-84 317.8 301 58.5
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.6e-84 315.5 300 55.7
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 7.3e-84 315.1 301 54.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.2e-83 314.3 302 57.0
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 6.2e-83 312.0 301 56.5
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.8e-82 310.5 314 53.5
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.8e-82 310.5 309 52.4
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 2.0e-81 307.0 309 52.1
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 2.6e-81 306.6 299 55.2
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 3.4e-81 306.2 300 53.7
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.4e-81 305.8 299 54.2
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 4.9e-80 302.4 309 52.1
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 8.3e-80 301.6 333 50.8
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 8.3e-80 301.6 333 50.8
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 3.2e-79 299.7 284 57.0
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 5.4e-79 298.9 299 53.5
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 9.2e-79 298.1 300 53.7
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.0e-78 297.0 300 53.0
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 2.0e-78 297.0 300 53.0
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 2.7e-78 296.6 310 51.6
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.7e-78 296.6 301 52.8
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 4.6e-78 295.8 309 51.1
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.0e-78 295.4 300 53.0
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 6.0e-78 295.4 299 53.5
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 7.8e-78 295.0 311 51.8
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.0e-77 294.7 310 52.6
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.7e-77 293.9 309 50.8
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 2.3e-77 293.5 310 50.3
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.0e-77 293.1 299 53.8
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.9e-77 292.7 300 52.3
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.9e-77 292.7 306 50.0
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 8.6e-77 291.6 305 49.5
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.1e-76 291.2 310 52.3
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 7.3e-76 288.5 299 51.8
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 9.5e-76 288.1 337 49.6
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.1e-75 287.0 303 52.8
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.8e-75 286.6 331 47.7
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.6e-75 286.2 304 51.0
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 8.1e-75 285.0 284 54.2
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 8.1e-75 285.0 320 49.4
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.4e-74 284.3 319 50.5
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.8e-74 283.9 300 52.7
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.8e-74 283.9 320 49.1
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.8e-74 283.9 320 49.1
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 3.1e-74 283.1 320 49.4
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 4.0e-74 282.7 292 53.4
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 5.2e-74 282.3 346 46.2
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.4e-73 279.6 344 46.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 7.5e-73 278.5 320 47.8
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 1.3e-72 277.7 296 49.7
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.7e-72 277.3 320 48.8
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.9e-72 276.6 168 81.5
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 4.9e-72 275.8 309 49.5
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 8.3e-72 275.0 321 48.0
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.7e-70 270.0 300 50.7
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.0e-69 268.1 273 53.1
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.3e-69 266.9 306 49.7
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.3e-68 263.1 302 47.7
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.1e-67 260.4 176 75.0
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 3.6e-67 259.6 299 48.8
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.4e-65 253.1 310 44.5
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.4e-65 253.1 291 48.5
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 7.6e-65 251.9 302 45.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.3e-64 251.1 306 46.7
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 2.2e-64 250.4 302 46.7
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.1e-63 248.1 270 51.1
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 9.2e-63 245.0 309 45.3
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.2e-62 244.6 329 43.8
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 6.6e-61 238.8 299 45.2
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.9e-60 237.3 299 44.8
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 2.5e-60 236.9 306 45.4
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.3e-60 236.5 302 45.0
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 4.3e-60 236.1 344 43.0
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.3e-60 235.3 236 51.7
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.1e-59 233.8 301 43.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 4.7e-59 232.6 300 43.7
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.0e-57 227.3 237 51.9
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 6.0e-54 215.7 130 84.6
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 2.3e-53 213.8 250 46.0
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.1e-51 207.2 294 39.5
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 3.1e-50 203.4 227 49.3
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.2e-49 201.4 175 61.1
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 2.6e-49 200.3 281 42.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.4e-49 199.9 337 35.0
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 9.9e-49 198.4 186 55.9
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.9e-48 196.8 232 47.8
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.4e-47 194.5 178 55.1
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.6e-46 191.0 310 36.5
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 5.1e-45 186.0 309 35.3
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 8.7e-45 185.3 181 54.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.4e-42 177.2 189 54.5
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.1e-37 159.5 124 66.9
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.1e-36 158.3 125 67.2
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 5.6e-36 156.0 100 83.0
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.3e-35 154.8 284 35.9
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 5.3e-34 149.4 332 30.4
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.9e-29 133.3 106 67.9
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.5e-28 130.6 127 56.7
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 3.3e-28 130.2 238 33.2
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 2.6e-25 120.6 103 62.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 4.2e-15 86.7 80 51.2
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 9.4e-15 85.5 79 51.9
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 7.9e-14 82.4 129 44.2
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 4.5e-09 66.6 87 43.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 2.5e-07 60.8 73 47.9
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.6e-06 58.2 73 43.8


User provided reference genes

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